Literature DB >> 25979347

Formaldehyde cross-linking and structural proteomics: Bridging the gap.

Savita Srinivasa1, Xuan Ding2, Juergen Kast3.   

Abstract

Proteins are dynamic entities constantly moving and altering their structures based on their functions and interactions inside and outside the cell. Formaldehyde cross-linking combined with mass spectrometry can accurately capture interactions of these rapidly changing biomolecules while maintaining their physiological surroundings. Even with its numerous established uses in biology and compatibility with mass spectrometry, formaldehyde has not yet been applied in structural proteomics. However, formaldehyde cross-linking is moving toward analyzing tertiary structure, which conventional cross-linkers have already accomplished. The purpose of this review is to describe the potential of formaldehyde cross-linking in structural proteomics by highlighting its applications, characteristics and current status in the field.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biological applications; Cross-linking; Formaldehyde; Mass spectrometry; Protein interactions; Protein structure

Mesh:

Substances:

Year:  2015        PMID: 25979347     DOI: 10.1016/j.ymeth.2015.05.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  7 in total

1.  Rapid immunoprecipitation mass spectrometry of endogenous proteins (RIME) for analysis of chromatin complexes.

Authors:  Hisham Mohammed; Christopher Taylor; Gordon D Brown; Evaggelia K Papachristou; Jason S Carroll; Clive S D'Santos
Journal:  Nat Protoc       Date:  2016-01-21       Impact factor: 13.491

Review 2.  Cross-Linking Mass Spectrometry: An Emerging Technology for Interactomics and Structural Biology.

Authors:  Clinton Yu; Lan Huang
Journal:  Anal Chem       Date:  2017-11-21       Impact factor: 6.986

Review 3.  Chemical cross-linking with mass spectrometry: a tool for systems structural biology.

Authors:  Juan D Chavez; James E Bruce
Journal:  Curr Opin Chem Biol       Date:  2018-08-30       Impact factor: 8.822

4.  Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein-RNA Interactions.

Authors:  Uzma Zaman; Florian M Richter; Romina Hofele; Katharina Kramer; Timo Sachsenberg; Oliver Kohlbacher; Christof Lenz; Henning Urlaub
Journal:  Mol Cell Proteomics       Date:  2015-10-08       Impact factor: 5.911

5.  RNA-binding proteins and heat-shock protein 90 are constituents of the cytoplasmic capping enzyme interactome.

Authors:  Jackson B Trotman; Bernice A Agana; Andrew J Giltmier; Vicki H Wysocki; Daniel R Schoenberg
Journal:  J Biol Chem       Date:  2018-08-30       Impact factor: 5.157

6.  In vivo mapping of a dynamic ribonucleoprotein granule interactome in early Drosophila embryos.

Authors:  Jimiao Zheng; Ming Gao; Nhan Huynh; Samuel J Tindell; Hieu D L Vo; W Hayes McDonald; Alexey L Arkov
Journal:  FEBS Open Bio       Date:  2016-10-25       Impact factor: 2.693

7.  Characterization of the human myelin oligodendrocyte glycoprotein antibody response in demyelination.

Authors:  Fiona Tea; Joseph A Lopez; Sudarshini Ramanathan; Vera Merheb; Fiona X Z Lee; Alicia Zou; Deepti Pilli; Ellis Patrick; Anneke van der Walt; Mastura Monif; Esther M Tantsis; Eppie M Yiu; Steve Vucic; Andrew P D Henderson; Anthony Fok; Clare L Fraser; Jeanette Lechner-Scott; Stephen W Reddel; Simon Broadley; Michael H Barnett; David A Brown; Jan D Lunemann; Russell C Dale; Fabienne Brilot
Journal:  Acta Neuropathol Commun       Date:  2019-09-03       Impact factor: 7.801

  7 in total

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