Literature DB >> 25972988

Boolean network model for GPR142 against Type 2 diabetes and relative dynamic change ratio analysis using systems and biological circuits approach.

Aman Chandra Kaushik1, Shakti Sahi1.   

Abstract

Systems biology addresses challenges in the analysis of genomics data, especially for complex genes and protein interactions using Meta data approach on various signaling pathways. In this paper, we report systems biology and biological circuits approach to construct pathway and identify early gene and protein interactions for predicting GPR142 responses in Type 2 diabetes. The information regarding genes, proteins and other molecules involved in Type 2 diabetes were retrieved from literature and kinetic simulation of GPR142 was carried out in order to determine the dynamic interactions. The major objective of this work was to design a GPR142 biochemical pathway using both systems biology as well as biological circuits synthetically. The term 'synthetically' refers to building biological circuits for cell signaling pathway especially for hormonal pathway disease. The focus of the paper is on logical components and logical circuits whereby using these applications users can create complex virtual circuits. Logic gates process represents only true or false and investigates whether biological regulatory circuits are active or inactive. The basic gates used are AND, NAND, OR, XOR and NOT gates and Integrated circuit composition of many such basic gates and some derived gates. Biological circuits may have a futuristic application in biomedical sciences which may involve placing a micro chip in human cells to modulate the down or up regulation of hormonal disease.

Entities:  

Keywords:  BioLogic; Biological circuits; GPR142; Systems biology; Type 2 diabetes

Year:  2015        PMID: 25972988      PMCID: PMC4427584          DOI: 10.1007/s11693-015-9163-0

Source DB:  PubMed          Journal:  Syst Synth Biol        ISSN: 1872-5325


  40 in total

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6.  GENIES: gene network inference engine based on supervised analysis.

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7.  From genomics to chemical genomics: new developments in KEGG.

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8.  KEGG Atlas mapping for global analysis of metabolic pathways.

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9.  Modular architecture of metabolic pathways revealed by conserved sequences of reactions.

Authors:  Ai Muto; Masaaki Kotera; Toshiaki Tokimatsu; Zenichi Nakagawa; Susumu Goto; Minoru Kanehisa
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10.  The three-way switch operation of Rac1/RhoA GTPase-based circuit controlling amoeboid-hybrid-mesenchymal transition.

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  5 in total

1.  Deciphering the Biochemical Pathway and Pharmacokinetic Study of Amyloid βeta-42 with Superparamagnetic Iron Oxide Nanoparticles (SPIONs) Using Systems Biology Approach.

Authors:  Aman Chandra Kaushik; Ajay Kumar; Vivek Dhar Dwivedi; Shiv Bharadwaj; Sanjay Kumar; Kritika Bharti; Pavan Kumar; Ravi Kumar Chaudhary; Sarad Kumar Mishra
Journal:  Mol Neurobiol       Date:  2017-05-06       Impact factor: 5.590

2.  Characterization and synthetic biology of lipase from Bacillus amyloliquefaciens strain.

Authors:  Muhammad Tahir Khan; Aman Chandra Kaushik; Qurrat Ul Ain Rana; Shaukat Iqbal Malik; Anwar Sheed Khan; Dong-Qing Wei; Wasim Sajjad; Shabir Ahmad; Sajid Ali; Muhammad Irfan
Journal:  Arch Microbiol       Date:  2020-03-26       Impact factor: 2.552

Review 3.  Systems Medicine: The Application of Systems Biology Approaches for Modern Medical Research and Drug Development.

Authors:  Duncan Ayers; Philip J Day
Journal:  Mol Biol Int       Date:  2015-08-18

4.  Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes.

Authors:  Aman C Kaushik; Sanjay Kumar; Dong Q Wei; Shakti Sahi
Journal:  Front Chem       Date:  2018-02-14       Impact factor: 5.221

5.  Nano-particle mediated inhibition of Parkinson's disease using computational biology approach.

Authors:  Aman Chandra Kaushik; Shiv Bharadwaj; Sanjay Kumar; Dong-Qing Wei
Journal:  Sci Rep       Date:  2018-06-15       Impact factor: 4.379

  5 in total

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