Literature DB >> 25971972

Platymonas subcordiformis Channelrhodopsin-2 Function: I. THE PHOTOCHEMICAL REACTION CYCLE.

Istvan Szundi1, Hai Li2, Eefei Chen1, Roberto Bogomolni1, John L Spudich3, David S Kliger4.   

Abstract

The photocycle kinetics of Platymonas subcordiformis channelrhodopsin-2 (PsChR2), among the most highly efficient light-gated cation channels and the most blue-shifted channelrhodopsin, was studied by time-resolved absorption spectroscopy in the 340-650-nm range and in the 100-ns to 3-s time window. Global exponential fitting of the time dependence of spectral changes revealed six lifetimes: 0.60 μs, 5.3 μs, 170 μs, 1.4 ms, 6.7 ms, and 1.4 s. The sequential intermediates derived for a single unidirectional cycle scheme based on these lifetimes were found to contain mixtures of K, L, M, O, and P molecular states, named in analogy to photointermediates in the bacteriorhodopsin photocycle. The photochemistry is described by the superposition of two independent parallel photocycles. The analysis revealed that 30% of the photoexcited receptor molecules followed Cycle 1 through the K, M, O, and P states, whereas 70% followed Cycle 2 through the K, L, M, and O states. The recovered state, R, is spectrally close, but not identical, to the dark state on the seconds time scale. The two-cycle model of this high efficiency channelrhodopsin-2 (ChR) opens new perspectives in understanding the mechanism of channelrhodopsin function.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  channelrhodopsin; optogenetics; photocycle; photoreceptor; phototaxis; protein dynamic; rhodopsin; time-resolved spectroscopy; ultraviolet-visible spectroscopy (UV-Vis spectroscopy)

Mesh:

Substances:

Year:  2015        PMID: 25971972      PMCID: PMC4505411          DOI: 10.1074/jbc.M114.631614

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  19 in total

1.  The photocycle of channelrhodopsin-2: ultrafast reaction dynamics and subsequent reaction steps.

Authors:  Mirka-Kristin Verhoefen; Christian Bamann; Rene Blöcher; Ute Förster; Ernst Bamberg; Josef Wachtveitl
Journal:  Chemphyschem       Date:  2010-10-04       Impact factor: 3.102

2.  Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; Roger Janz; John L Spudich
Journal:  J Biol Chem       Date:  2013-08-30       Impact factor: 5.157

Review 3.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

Review 4.  Channelrhodopsin unchained: structure and mechanism of a light-gated cation channel.

Authors:  Víctor A Lórenz-Fonfría; Joachim Heberle
Journal:  Biochim Biophys Acta       Date:  2013-11-07

5.  Light-dark adaptation of channelrhodopsin C128T mutant.

Authors:  Eglof Ritter; Patrick Piwowarski; Peter Hegemann; Franz J Bartl
Journal:  J Biol Chem       Date:  2013-02-25       Impact factor: 5.157

Review 6.  Genetically encoded molecular tools for light-driven silencing of targeted neurons.

Authors:  Brian Y Chow; Xue Han; Edward S Boyden
Journal:  Prog Brain Res       Date:  2012       Impact factor: 2.453

7.  Schiff base protonation changes in Siberian hamster ultraviolet cone pigment photointermediates.

Authors:  Victoria L Mooney; Istvan Szundi; James W Lewis; Elsa C Y Yan; David S Kliger
Journal:  Biochemistry       Date:  2012-03-15       Impact factor: 3.162

8.  Diversity of Chlamydomonas channelrhodopsins.

Authors:  Sing-Yi Hou; Elena G Govorunova; Maria Ntefidou; C Elizabeth Lane; Elena N Spudich; Oleg A Sineshchekov; John L Spudich
Journal:  Photochem Photobiol       Date:  2011-11-29       Impact factor: 3.421

9.  Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function.

Authors:  Christian Bamann; Taryn Kirsch; Georg Nagel; Ernst Bamberg
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

10.  Transient protonation changes in channelrhodopsin-2 and their relevance to channel gating.

Authors:  Víctor A Lórenz-Fonfría; Tom Resler; Nils Krause; Melanie Nack; Michael Gossing; Gabriele Fischer von Mollard; Christian Bamann; Ernst Bamberg; Ramona Schlesinger; Joachim Heberle
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-18       Impact factor: 11.205

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  5 in total

1.  Identification of a Natural Green Light Absorbing Chloride Conducting Channelrhodopsin from Proteomonas sulcata.

Authors:  Jonas Wietek; Matthias Broser; Benjamin S Krause; Peter Hegemann
Journal:  J Biol Chem       Date:  2016-01-06       Impact factor: 5.157

2.  Platymonas subcordiformis Channelrhodopsin-2 (PsChR2) Function: II. RELATIONSHIP OF THE PHOTOCHEMICAL REACTION CYCLE TO CHANNEL CURRENTS.

Authors:  Istvan Szundi; Roberto Bogomolni; David S Kliger
Journal:  J Biol Chem       Date:  2015-05-13       Impact factor: 5.157

3.  Complex Photochemistry within the Green-Absorbing Channelrhodopsin ReaChR.

Authors:  Benjamin S Krause; Christiane Grimm; Joel C D Kaufmann; Franziska Schneider; Thomas P Sakmar; Franz J Bartl; Peter Hegemann
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

4.  Proton transfer reactions in the red light-activatable channelrhodopsin variant ReaChR and their relevance for its function.

Authors:  Joel C D Kaufmann; Benjamin S Krause; Christiane Grimm; Eglof Ritter; Peter Hegemann; Franz J Bartl
Journal:  J Biol Chem       Date:  2017-06-28       Impact factor: 5.157

Review 5.  Microbial Rhodopsins: Diversity, Mechanisms, and Optogenetic Applications.

Authors:  Elena G Govorunova; Oleg A Sineshchekov; Hai Li; John L Spudich
Journal:  Annu Rev Biochem       Date:  2017-03-09       Impact factor: 23.643

  5 in total

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