Literature DB >> 25965449

Design and Antigenic Epitopes Prediction of a New Trial Recombinant Multiepitopic Rotaviral Vaccine: In Silico Analyses.

Sima Jafarpour1, Hoda Ayat1, Ali Mohammad Ahadi1.   

Abstract

Rotavirus is the major etiologic factor of severe diarrheal disease. Natural infection provides protection against subsequent rotavirus infection and diarrhea. This research presents a new vaccine designed based on computational models. In this study, three types of epitopes are considered-linear, conformational, and combinational-in a proposed model protein. Several studies on rotavirus vaccines have shown that VP6 and VP4 proteins are good candidates for vaccine production. In the present study, a fusion protein was designed as a new generation of rotavirus vaccines by bioinformatics analyses. This model-based study using ABCpred, BCPREDS, Bcepred, and Ellipro web servers showed that the peptide presented in this article has the necessary properties to act as a vaccine. Prediction of linear B-cell epitopes of peptides is helpful to investigate whether these peptides are able to activate humoral immunity.

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Year:  2015        PMID: 25965449      PMCID: PMC4507124          DOI: 10.1089/vim.2014.0152

Source DB:  PubMed          Journal:  Viral Immunol        ISSN: 0882-8245            Impact factor:   2.257


  51 in total

1.  The PSIPRED protein structure prediction server.

Authors:  L J McGuffin; K Bryson; D T Jones
Journal:  Bioinformatics       Date:  2000-04       Impact factor: 6.937

2.  Prediction of CTL epitopes using QM, SVM and ANN techniques.

Authors:  Manoj Bhasin; G P S Raghava
Journal:  Vaccine       Date:  2004-08-13       Impact factor: 3.641

3.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

4.  Prediction of linear B-cell epitopes.

Authors:  Ulf Reimer
Journal:  Methods Mol Biol       Date:  2009

Review 5.  Tumor antigen-specific T helper cells in cancer immunity and immunotherapy.

Authors:  K L Knutson; M L Disis
Journal:  Cancer Immunol Immunother       Date:  2005-01-27       Impact factor: 6.968

6.  Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature.

Authors:  Wen Zhang; Yi Xiong; Meng Zhao; Hua Zou; Xinghuo Ye; Juan Liu
Journal:  BMC Bioinformatics       Date:  2011-08-17       Impact factor: 3.169

7.  Predicting linear B-cell epitopes using string kernels.

Authors:  Yasser El-Manzalawy; Drena Dobbs; Vasant Honavar
Journal:  J Mol Recognit       Date:  2008 Jul-Aug       Impact factor: 2.137

8.  Prediction of antigenic epitopes on protein surfaces by consensus scoring.

Authors:  Shide Liang; Dandan Zheng; Chi Zhang; Martin Zacharias
Journal:  BMC Bioinformatics       Date:  2009-09-22       Impact factor: 3.169

9.  Reliable B cell epitope predictions: impacts of method development and improved benchmarking.

Authors:  Jens Vindahl Kringelum; Claus Lundegaard; Ole Lund; Morten Nielsen
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

10.  Human rotavirus VP6-specific antibodies mediate intracellular neutralization by binding to a quaternary structure in the transcriptional pore.

Authors:  Mohammed S Aiyegbo; Gopal Sapparapu; Benjamin W Spiller; Ilyas M Eli; Dewight R Williams; Robert Kim; David E Lee; Tong Liu; Sheng Li; Virgil L Woods; David P Nannemann; Jens Meiler; Phoebe L Stewart; James E Crowe
Journal:  PLoS One       Date:  2013-05-09       Impact factor: 3.240

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  1 in total

Review 1.  A new Leishmania-specific hypothetical protein and its non-described specific B cell conformational epitope applied in the serodiagnosis of canine visceral leishmaniasis.

Authors:  Daniela P Lage; Vívian T Martins; Mariana C Duarte; Lourena E Costa; Esther Garde; Laura M Dimer; Amanda C S Kursancew; Miguel A Chávez-Fumagalli; Danielle F de Magalhães-Soares; Daniel Menezes-Souza; Bruno M Roatt; Ricardo A Machado-de-Ávila; Manuel Soto; Carlos A P Tavares; Eduardo A F Coelho
Journal:  Parasitol Res       Date:  2016-01-19       Impact factor: 2.289

  1 in total

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