Literature DB >> 25958855

HIV-1 drug discovery: targeting folded RNA structures with branched peptides.

Jessica E Wynn1, Webster L Santos.   

Abstract

Human immunodeficiency virus type 1 (HIV-1) is an RNA virus that is prone to high rates of mutation. While the disease is managed with current antiretroviral therapies, drugs with a new mode of action are needed. A strategy towards this goal is aimed at targeting the native three-dimensional fold of conserved RNA structures. This perspective highlights medium-sized peptides and peptidomimetics used to target two conserved RNA structures of HIV-1. In particular, branched peptides have the capacity to bind in a multivalent fashion, utilizing a large surface area to achieve the necessary affinity and selectivity toward the target RNA.

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Year:  2015        PMID: 25958855      PMCID: PMC4511164          DOI: 10.1039/c5ob00589b

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  113 in total

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Authors:  Ben Davis; Mohammad Afshar; Gabriele Varani; Alastair I H Murchie; Jonathan Karn; Georg Lentzen; Martin Drysdale; Justin Bower; Andrew J Potter; Ian D Starkey; Terry Swarbrick; Fareed Aboul-ela
Journal:  J Mol Biol       Date:  2004-02-13       Impact factor: 5.469

2.  2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription.

Authors:  Fabien Darfeuille; Andrey Arzumanov; Michael J Gait; Carmelo Di Primo; Jean-Jacques Toulmé
Journal:  Biochemistry       Date:  2002-10-08       Impact factor: 3.162

3.  An ethidium analogue that binds with high specificity to a base-bulged duplex from the TAR RNA region of the HIV-I genome.

Authors:  L S Ratmeyer; R Vinayak; G Zon; W D Wilson
Journal:  J Med Chem       Date:  1992-03-06       Impact factor: 7.446

4.  Library construction of neomycin-dipeptide heteroconjugates and selection against RRE RNA.

Authors:  Dae-Ro Ahn; Jaehoon Yu
Journal:  Bioorg Med Chem       Date:  2005-02-15       Impact factor: 3.641

5.  Probing the impact of valency on the routing of arginine-rich peptides into eukaryotic cells.

Authors:  Kim S Kawamura; Michael Sung; Eleonora Bolewska-Pedyczak; Jean Gariépy
Journal:  Biochemistry       Date:  2006-01-31       Impact factor: 3.162

6.  Real-time kinetics of HIV-1 Rev-Rev response element interactions. Definition of minimal binding sites on RNA and protein and stoichiometric analysis.

Authors:  D I Van Ryk; S Venkatesan
Journal:  J Biol Chem       Date:  1999-06-18       Impact factor: 5.157

7.  Branched peptide boronic acids (BPBAs): a novel mode of binding towards RNA.

Authors:  Wenyu Zhang; David I Bryson; Jason B Crumpton; Jessica Wynn; Webster L Santos
Journal:  Chem Commun (Camb)       Date:  2013-03-25       Impact factor: 6.222

Review 8.  Velcade: U.S. FDA approval for the treatment of multiple myeloma progressing on prior therapy.

Authors:  Robert C Kane; Peter F Bross; Ann T Farrell; Richard Pazdur
Journal:  Oncologist       Date:  2003

9.  Structure-based drug design targeting an inactive RNA conformation: exploiting the flexibility of HIV-1 TAR RNA.

Authors:  Alastair I H Murchie; Ben Davis; Catherine Isel; Mohammad Afshar; Martin J Drysdale; Justin Bower; Andrew J Potter; Ian D Starkey; Terry M Swarbrick; Shabana Mirza; Catherine D Prescott; Philippe Vaglio; Fareed Aboul-ela; Jonathan Karn
Journal:  J Mol Biol       Date:  2004-02-20       Impact factor: 5.469

10.  An antifungal agent inhibits an aminoacyl-tRNA synthetase by trapping tRNA in the editing site.

Authors:  Fernando L Rock; Weimin Mao; Anya Yaremchuk; Mikhail Tukalo; Thibaut Crépin; Huchen Zhou; Yong-Kang Zhang; Vincent Hernandez; Tsutomu Akama; Stephen J Baker; Jacob J Plattner; Lucy Shapiro; Susan A Martinis; Stephen J Benkovic; Stephen Cusack; M R K Alley
Journal:  Science       Date:  2007-06-22       Impact factor: 47.728

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  3 in total

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Authors:  Stephanie A Barros; Ina Yoon; Sung-Eun Suh; David M Chenoweth
Journal:  Org Lett       Date:  2016-05-12       Impact factor: 6.005

2.  Molecular recognition of a branched peptide with HIV-1 Rev Response Element (RRE) RNA.

Authors:  Yumin Dai; Ashley N Peralta; Jessica E Wynn; Chringma Sherpa; Hao Li; Astha Verma; Stuart F J Le Grice; Webster L Santos
Journal:  Bioorg Med Chem       Date:  2019-03-07       Impact factor: 3.641

Review 3.  Nuclease-like metalloscissors: Biomimetic candidates for cancer and bacterial and viral infections therapy.

Authors:  Marzieh Anjomshoa; Bagher Amirheidari
Journal:  Coord Chem Rev       Date:  2022-02-05       Impact factor: 22.315

  3 in total

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