Literature DB >> 25958028

Globally optimal co-segmentation of three-dimensional pulmonary ¹H and hyperpolarized ³He MRI with spatial consistence prior.

Fumin Guo1, Jing Yuan2, Martin Rajchl3, Sarah Svenningsen4, Dante P I Capaldi5, Khadija Sheikh6, Aaron Fenster7, Grace Parraga8.   

Abstract

Pulmonary imaging using hyperpolarized (3)He/(129)Xe gas is emerging as a new way to understand the regional nature of pulmonary ventilation abnormalities in obstructive lung diseases. However, the quantitative information derived is completely dependent on robust methods to segment both functional and structural/anatomical data. Here, we propose an approach to jointly segment the lung cavity from (1)H and (3)He pulmonary magnetic resonance images (MRI) by constraining the spatial consistency of the two segmentation regions, which simultaneously employs the image features from both modalities. We formulated the proposed co-segmentation problem as a coupled continuous min-cut model and showed that this combinatorial optimization problem can be solved globally and exactly by means of convex relaxation. In particular, we introduced a dual coupled continuous max-flow model to study the convex relaxed coupled continuous min-cut model under a primal and dual perspective. This gave rise to an efficient duality-based convex optimization algorithm. We implemented the proposed algorithm in parallel using general-purpose programming on graphics processing unit (GPGPU), which substantially increased its computational efficiency. Our experiments explored a clinical dataset of 25 subjects with chronic obstructive pulmonary disease (COPD) across a wide range of disease severity. The results showed that the proposed co-segmentation approach yielded superior performance compared to single-channel image segmentation in terms of precision, accuracy and robustness.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Anatomical MRI; Co-segmentation; Continuous max-flow; Convex optimization; Functional MRI

Mesh:

Substances:

Year:  2015        PMID: 25958028     DOI: 10.1016/j.media.2015.04.001

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  5 in total

1.  Development of a pulmonary imaging biomarker pipeline for phenotyping of chronic lung disease.

Authors:  Fumin Guo; Dante Capaldi; Miranda Kirby; Khadija Sheikh; Sarah Svenningsen; David G McCormack; Aaron Fenster; Grace Parraga
Journal:  J Med Imaging (Bellingham)       Date:  2018-06-28

2.  Assessment of the influence of lung inflation state on the quantitative parameters derived from hyperpolarized gas lung ventilation MRI in healthy volunteers.

Authors:  Paul J C Hughes; Laurie Smith; Ho-Fung Chan; Bilal A Tahir; Graham Norquay; Guilhem J Collier; Alberto Biancardi; Helen Marshall; Jim M Wild
Journal:  J Appl Physiol (1985)       Date:  2018-11-09

3.  Slic-Seg: A minimally interactive segmentation of the placenta from sparse and motion-corrupted fetal MRI in multiple views.

Authors:  Guotai Wang; Maria A Zuluaga; Rosalind Pratt; Michael Aertsen; Tom Doel; Maria Klusmann; Anna L David; Jan Deprest; Tom Vercauteren; Sébastien Ourselin
Journal:  Med Image Anal       Date:  2016-05-03       Impact factor: 8.545

4.  Multi-phase simultaneous segmentation of tumor in lung 4D-CT data with context information.

Authors:  Zhengwen Shen; Huafeng Wang; Weiwen Xi; Xiaogang Deng; Jin Chen; Yu Zhang
Journal:  PLoS One       Date:  2017-06-16       Impact factor: 3.240

5.  Semiautomated Ventilation Defect Quantification in Exercise-induced Bronchoconstriction Using Hyperpolarized Helium-3 Magnetic Resonance Imaging: A Repeatability Study.

Authors:  Wei Zha; David J Niles; Stanley J Kruger; Bernard J Dardzinski; Robert V Cadman; David G Mummy; Scott K Nagle; Sean B Fain
Journal:  Acad Radiol       Date:  2016-06-02       Impact factor: 5.482

  5 in total

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