| Literature DB >> 25954520 |
Mustapha El Bakkali1, Lhassane Ismaili2, Isabelle Tomassoli2, Laurence Nicod1, Marc Pudlo2, Bernard Refouvelet2.
Abstract
From well-known antioxidants agents, we developed a first pharmacophore model containing four common chemical features: one aromatic ring and three hydrogen bond acceptors. This model served as a template in virtual screening of Maybridge and NCI databases that resulted in selection of sixteen compounds. The selected compounds showed a good antioxidant activity measured by three chemical tests: DPPH radical, OH° radical, and superoxide radical scavenging. New synthetic compounds with a good correlation with the model were prepared, and some of them presented a good antioxidant activity.Entities:
Year: 2011 PMID: 25954520 PMCID: PMC4412044 DOI: 10.1155/2011/592879
Source DB: PubMed Journal: Int J Med Chem ISSN: 2090-2077
Scheme 1Chemical structure of Quercetin 1, curcumine 2, resveratrol 3, Trolox 4, and N-acetyl cystein 5.
Summary of hypothesis.
| Hypo | Feature | Rank | Direct hit mask | Partial hit mask |
|---|---|---|---|---|
| 1 | RAAA | 36.68 | 01111 | 10000 |
| 2 | RAAA | 36.43 | 01111 | 10000 |
| 3 | RAAA | 36.29 | 01111 | 10000 |
| 4 | AAAA | 36.04 | 11101 | 00010 |
| 5 | AAAA | 35.82 | 11101 | 00010 |
| 6 | RAAA | 35.67 | 11111 | 10000 |
| 7 | AAAA | 35.19 | 11101 | 00010 |
| 8 | HAAA | 34.10 | 01111 | 10000 |
| 9 | HAAA | 33.70 | 01111 | 10000 |
| 10 | HAAA | 33.52 | 01111 | 10000 |
In direct hit mask, (1) indicates every feature of training set molecule is mapped, (0) indicates 1 or more features were not mapped.
In partial hit mask, (0) indicates every feature of training set molecule is mapped; (1) indicates 1 or more features were not mapped.
R: ring aromatic (RA), A: hydrogen bond acceptor (HBA), H: hydrophobic (H).
Figure 1Quercetin mapping with selected pharmacophore.
Scheme 2Chemical structure of selected sixteen compounds.
Scheme 3Reactivity of DPPH radical.
DPPH radical, hydroxyl radical, and superoxide radical scavenging of identified compounds.
| Compounds | Concentration | ||||||||
| 50 | 100 | 150 | |||||||
|
| |||||||||
|
| DPPH | OH° | O2 − | DPPH | OH° | O2 − | DPPH | OH° | O2 − |
|
| 50 ± 1.5 | 85 ± 1.6 | 62 ± 1.9 | 80 ± 1.7 | 92 ± 2 | 70 ± 1.4 | 85 ± 1.6 | 95 ± 2.3 | 75 ± 1.1 |
|
| 42 ± 1.2 | 70 ± 1.5 | 40 ± 1.3 | 60 ± 1.5 | 81 ± 1.9 | 55 ± 0.9 | 69 ± 1.2 | 90 ± 2.5 | 62 ± 1.4 |
|
| 35 ± 0.7 | 67 ± 1.6 | 55 ± 0.8 | 58 ± 1.4 | 75 ± 1.8 | 62 ± 1.5 | 63 ± 1.5 | 79 ± 1.8 | 68 ± 2.2 |
|
| 40 ± 0.8 | 53 ± 1.3 | 35 ± 0.8 | 55 ± 1.6 | 62 ± 2.2 | 58 ± 2.2 | 60 ± 2.3 | 80 ± 1.9 | 66 ± 2.2 |
|
| 25 ± 0.7 | 46 ± 1.4 | 45 ± 0.8 | 35 ± 0.8 | 51 ± 1.3 | 50 ± 1.3 | 50 ± 0.8 | 66 ± 0.8 | 63 ± 0.9 |
|
| 25 ± 0.5 | 80 ± 1.9 | 29 ± 0.8 | 30 ± 0.7 | 85 ± 1.8 | 42 ± 0.8 | 35 ± 0.7 | 88 ± 1.9 | 60 ± 1.4 |
|
| 15 ± 0.5 | 88 ± 1.8 | 35 ± 0.8 | 19 ± 0.7 | 90 ± 2.1 | 47 ± 1.6 | 30 ± 0.8 | 95 ± 1.9 | 70 ± 1.8 |
|
| 14 ± 0.4 | 88 ± 1.8 | 22 ± 0.7 | 25 ± 0.4 | 92 ± 2.6 | 39 ± 0.8 | 31 ± 0.5 | 96 ± 1.9 | 47 ± 1.3 |
|
| 29 ± 1.6 | 95 ± 1.8 | 22 ± 1.6 | 33 ± 2.2 | 96 ± 2.1 | 33 ± 1.3 | 42 ± 0.8 | 98 ± 1.9 | 45 ± 1.6 |
|
| 12 ± 0.7 | 85 ± 1.9 | 18 ± 1.6 | 19 ± 0.7 | 95 ± 1.9 | 30 ± 0.5 | 32 ± 1.3 | 98 ± 1.8 | 49 ± 1.4 |
|
| 13 ± 0.5 | 82 ± 1.9 | 12 ± 0.5 | 18 ± 0.8 | 92 ± 1.4 | 24 ± 0.8 | 30 ± 1.3 | 96 ± 2.1 | 37 ± 0.8 |
|
| 28 ± 0.8 | 84 ± 1.8 | 10 ± 0.3 | 35 ± 0.9 | 88 ± 1.8 | 18 ± 0.7 | 42 ± 1.3 | 91 ± 2.5 | 40 ± 1.5 |
|
| 19 ± 0.7 | 92 ± 1.9 | 10 ± 0.5 | 23 ± 0.7 | 94 ± 1.9 | 12 ± 0.3 | 27 ± 0.8 | 98 ± 2.1 | 20 ± 0.8 |
|
| 12 ± 0.4 | 88 ± 1.9 | 24 ± 0.6 | 15 ± 0.4 | 90 ± 1.8 | 33 ± 0.8 | 30 ± 0.8 | 95 ± 1.8 | 57 ± 1.3 |
|
| 25 ± 0.8 | 91 ± 1.8 | 15 ± 0.5 | 38 ± 1.4 | 95 ± 2.5 | 25 ± 0.7 | 49 ± 1.4 | 98 ± 2.1 | 51 ± 1.5 |
|
| 28 ± 0.8 | 89 ± 1.5 | 22 ± 0.4 | 33 ± 0.6 | 90 ± 1.9 | 28 ± 0.8 | 48 ± 1.4 | 92 ± 2.1 | 38 ± 1.4 |
|
| 12 ± 0.3 | 82 ± 2.1 | 10 ± 0.2 | 18 ± 0.5 | 92 ± 2.1 | 22 ± 0.7 | 25 ± 0.8 | 92 ± 1.8 | 35 ± 1.2 |
|
| 9 ± 0.2 | 85 ± 1.8 | 25 ± 0.8 | 12 ± 0.3 | 93 ± 1.9 | 38 ± 0.8 | 15 ± 0.3 | 94 ± 1.9 | 40 ± 0.8 |
|
| 26 ± 0.8 | 79 ± 1.4 | 25 ± 0.6 | 35 ± 0.9 | 85 ± 1.8 | 32 ± 1 | 48 ± 1.4 | 87 ± 1.9 | 45 ± 2.2 |
|
| 25 ± 0.8 | 96 ± 1.9 | 39 ± 1.4 | 32 ± 1.4 | 98 ± 2.1 | 45 ± 1.5 | 40 ± 1.3 | 99 ± 1.9 | 60 ± 1.4 |
|
| 15 ± 0.5 | 80 ± 2.1 | 15 ± 0.4 | 28 ± 0.8 | 82 ± 1.9 | 30 ± 0.7 | 40 ± 0.9 | 85 ± 2.1 | 55 ± 2.2 |
∗RSA: Radical Scavenging Activity.
Figure 2Compound 8c mapping with a pharmacophore.
Scheme 4Synthetic route to prepare compounds 8.
Description and fit value of pharmacophore mapping of compounds 8a–h.
| Compounds | R | R1 | R2 | R3 | Fit value |
|---|---|---|---|---|---|
|
| H | 2-OH | 4-OH | H | 3.2 |
|
| H | 2-OH | 5-CH3 | H | 3.0 |
|
| H | 2-OH | 5-OCH3 | H | 3.3 |
|
| H | 2-Cl | 3-NO2 | 6-Cl | 2.6 |
|
| CH3 | 2-Cl | 3-NO2 | 6-Cl | 2.8 |
|
| CH3 | 2-OH | 5-CH3 | H | 2.7 |
|
| CH3 | 2-OH | 5-OCH3 | H | 3.1 |
|
| CH3 | 2-NO2 | H | H | 2.7 |
Fit value represents a good match of features of the pharmacophore model with the ligand.
DPPH radical and Superoxide radical scavenging of synthetic compounds.
| Compounds | Concentration | |||||
| 50 | 100 | 150 | ||||
|
| ||||||
|
| DPPH | O2 − | DPPH | O2 − | DPPH | O2 − |
|
| 48 ± 1.2 | 62.5 ± 1.5 | 65 ± 1.7 | 70 ± 2.1 | 75 ± 2 | 82 ± 2.5 |
|
| 35 ± 1.3 | 38 ± 1.1 | 46 ± 1.5 | 45 ± 1.2 | 59 ± 1.5 | 58 ± 1.7 |
|
| 52 ± 1.2 | 54.7 | 68 ± 1.9 | 65 ± 1.7 | 83 ± 2.5 | 76 ± 2.4 |
|
| 30 ± 1.5 | 24.7 ± 1.4 | 55 ± 1.7 | 34.5 ± 1.5 | 67 ± 1.5 | 45 ± 1.8 |
|
| 33 ± 1.1 | 3.8 ± 0.1 | 46 ± 1.2 | 10 ± 0.2 | 58 ± 1.7 | 23 ± 0.9 |
|
| 25 ± 0.4 | 21.6 ± 0.6 | 35 ± 1.1 | 31 ± 1.1 | 50 ± 1.2 | 43 ± 1.2 |
|
| 30 ± 0.5 | 20.8 ± 0.7 | 45 ± 1.2 | 33 ± 1.2 | 60 ± 1.7 | 45 ± 1.5 |
|
| 13 ± 0.3 | 36.5 ± 1.1 | 24 ± 0.9 | 46 ± 1.4 | 31 ± 1.4 | 55 ± 1.6 |
∗RSA: Radical Scavenging Activity.