Literature DB >> 25954400

Pharmacovigilance on twitter? Mining tweets for adverse drug reactions.

Karen O'Connor1, Pranoti Pimpalkhute1, Azadeh Nikfarjam1, Rachel Ginn1, Karen L Smith2, Graciela Gonzalez1.   

Abstract

Recent research has shown that Twitter data analytics can have broad implications on public health research. However, its value for pharmacovigilance has been scantly studied - with health related forums and community support groups preferred for the task. We present a systematic study of tweets collected for 74 drugs to assess their value as sources of potential signals for adverse drug reactions (ADRs). We created an annotated corpus of 10,822 tweets. Each tweet was annotated for the presence or absence of ADR mentions, with the span and Unified Medical Language System (UMLS) concept ID noted for each ADR present. Using Cohen's kappa1, we calculated the inter-annotator agreement (IAA) for the binary annotations to be 0.69. To demonstrate the utility of the corpus, we attempted a lexicon-based approach for concept extraction, with promising success (54.1% precision, 62.1% recall, and 57.8% F-measure). A subset of the corpus is freely available at: http://diego.asu.edu/downloads.

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Year:  2014        PMID: 25954400      PMCID: PMC4419871     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

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2.  Pattern mining for extraction of mentions of Adverse Drug Reactions from user comments.

Authors:  Azadeh Nikfarjam; Graciela H Gonzalez
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

3.  Estimating consumer familiarity with health terminology: a context-based approach.

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4.  The new Sentinel Network--improving the evidence of medical-product safety.

Authors:  Richard Platt; Marcus Wilson; K Arnold Chan; Joshua S Benner; Janet Marchibroda; Mark McClellan
Journal:  N Engl J Med       Date:  2009-07-27       Impact factor: 91.245

5.  The need for definitions in pharmacovigilance.

Authors:  Marie Lindquist
Journal:  Drug Saf       Date:  2007       Impact factor: 5.606

Review 6.  Evaluating temporal relations in clinical text: 2012 i2b2 Challenge.

Authors:  Weiyi Sun; Anna Rumshisky; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2013-04-05       Impact factor: 4.497

Review 7.  Under-reporting of adverse drug reactions : a systematic review.

Authors:  Lorna Hazell; Saad A W Shakir
Journal:  Drug Saf       Date:  2006       Impact factor: 5.228

8.  Phonetic spelling filter for keyword selection in drug mention mining from social media.

Authors:  Pranoti Pimpalkhute; Apurv Patki; Azadeh Nikfarjam; Graciela Gonzalez
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2014-04-07

9.  A side effect resource to capture phenotypic effects of drugs.

Authors:  Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

  9 in total
  34 in total

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Authors:  Gregory E Powell; Harry A Seifert; Tjark Reblin; Phil J Burstein; James Blowers; J Alan Menius; Jeffery L Painter; Michele Thomas; Carrie E Pierce; Harold W Rodriguez; John S Brownstein; Clark C Freifeld; Heidi G Bell; Nabarun Dasgupta
Journal:  Drug Saf       Date:  2016-05       Impact factor: 5.606

Review 2.  Utilizing social media data for pharmacovigilance: A review.

Authors:  Abeed Sarker; Rachel Ginn; Azadeh Nikfarjam; Karen O'Connor; Karen Smith; Swetha Jayaraman; Tejaswi Upadhaya; Graciela Gonzalez
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Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

Review 4.  Capturing the Patient's Perspective: a Review of Advances in Natural Language Processing of Health-Related Text.

Authors:  G Gonzalez-Hernandez; A Sarker; K O'Connor; G Savova
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Review 5.  A scoping review of the use of Twitter for public health research.

Authors:  Oduwa Edo-Osagie; Beatriz De La Iglesia; Iain Lake; Obaghe Edeghere
Journal:  Comput Biol Med       Date:  2020-05-16       Impact factor: 4.589

6.  Detecting Adverse Drug Reactions on Twitter with Convolutional Neural Networks and Word Embedding Features.

Authors:  Aaron J Masino; Daniel Forsyth; Alexander G Fiks
Journal:  J Healthc Inform Res       Date:  2018-04-12

7.  Identifying personal health experience tweets with deep neural networks.

Authors:  Ravish Gupta; Matrika Gupta; Ricardo A Calix; Gordon R Bernard
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2017-07

8.  Social Media, Big Data, and Mental Health: Current Advances and Ethical Implications.

Authors:  Mike Conway; Daniel O'Connor
Journal:  Curr Opin Psychol       Date:  2016-06

9.  Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in Twitter posts.

Authors:  Anne Cocos; Alexander G Fiks; Aaron J Masino
Journal:  J Am Med Inform Assoc       Date:  2017-07-01       Impact factor: 4.497

10.  Automatic gender detection in Twitter profiles for health-related cohort studies.

Authors:  Yuan-Chi Yang; Mohammed Ali Al-Garadi; Jennifer S Love; Jeanmarie Perrone; Abeed Sarker
Journal:  JAMIA Open       Date:  2021-06-23
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