Literature DB >> 25948716

pez: phylogenetics for the environmental sciences.

William D Pearse1, Marc W Cadotte2, Jeannine Cavender-Bares3, Anthony R Ives4, Caroline M Tucker5, Steve C Walker6, Matthew R Helmus7.   

Abstract

UNLABELLED: pez is an R package that permits measurement, modelling and simulation of phylogenetic structure in ecological data. pez contains the first implementation of many methods in R, and aggregates existing data structures and methods into a single, coherent package.
AVAILABILITY AND IMPLEMENTATION: pez is released under the GPL v3 open-source license, available on the Internet from CRAN (http://cran.r-project.org). The package is under active development, and the authors welcome contributions (see http://github.com/willpearse/pez). CONTACT: will.pearse@gmail.com.
© The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Mesh:

Year:  2015        PMID: 25948716     DOI: 10.1093/bioinformatics/btv277

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  24 in total

1.  Factors influencing bacterial microbiome composition in a wild non-human primate community in Taï National Park, Côte d'Ivoire.

Authors:  Jan F Gogarten; T Jonathan Davies; Jacquelynn Benjamino; J Peter Gogarten; Joerg Graf; Alexander Mielke; Roger Mundry; Michael C Nelson; Roman M Wittig; Fabian H Leendertz; Sébastien Calvignac-Spencer
Journal:  ISME J       Date:  2018-06-28       Impact factor: 10.302

2.  Zygomorphic flowers have fewer potential pollinator species.

Authors:  Jeremy B Yoder; Giancarlo Gomez; Colin J Carlson
Journal:  Biol Lett       Date:  2020-09-02       Impact factor: 3.703

3.  Exotic plant species receive adequate pollinator service despite variable integration into plant-pollinator networks.

Authors:  Amibeth H Thompson; Tiffany M Knight
Journal:  Oecologia       Date:  2018-03-01       Impact factor: 3.225

4.  Water and nitrogen shape winter annual plant diversity and community composition in near-urban Sonoran Desert preserves.

Authors:  Megan M Wheeler; Scott L Collins; Nancy B Grimm; Elizabeth M Cook; Christopher Clark; Ryan A Sponseller; Sharon J Hall
Journal:  Ecol Monogr       Date:  2021-02-19       Impact factor: 10.315

5.  Remotely detected aboveground plant function predicts belowground processes in two prairie diversity experiments.

Authors:  Jeannine Cavender-Bares; Anna K Schweiger; John A Gamon; Hamed Gholizadeh; Kimberly Helzer; Cathleen Lapadat; Michael D Madritch; Philip A Townsend; Zhihui Wang; Sarah E Hobbie
Journal:  Ecol Monogr       Date:  2021-11-23       Impact factor: 9.814

6.  Decadal changes in fire frequencies shift tree communities and functional traits.

Authors:  Adam F A Pellegrini; Tyler Refsland; Colin Averill; César Terrer; A Carla Staver; Dale G Brockway; Anthony Caprio; Wayne Clatterbuck; Corli Coetsee; James D Haywood; Sarah E Hobbie; William A Hoffmann; John Kush; Tom Lewis; W Keith Moser; Steven T Overby; William A Patterson; Kabir G Peay; Peter B Reich; Casey Ryan; Mary Anne S Sayer; Bryant C Scharenbroch; Tania Schoennagel; Gabriel Reuben Smith; Kirsten Stephan; Chris Swanston; Monica G Turner; J Morgan Varner; Robert B Jackson
Journal:  Nat Ecol Evol       Date:  2021-02-25       Impact factor: 15.460

7.  Commercial Plant Production and Consumption Still Follow the Latitudinal Gradient in Species Diversity despite Economic Globalization.

Authors:  Erik J Nelson; Matthew R Helmus; Jeannine Cavender-Bares; Stephen Polasky; Jesse R Lasky; Amy E Zanne; William D Pearse; Nathan J B Kraft; Daniela A Miteva; William F Fagan
Journal:  PLoS One       Date:  2016-10-05       Impact factor: 3.240

8.  A guide to phylogenetic metrics for conservation, community ecology and macroecology.

Authors:  Caroline M Tucker; Marc W Cadotte; Silvia B Carvalho; T Jonathan Davies; Simon Ferrier; Susanne A Fritz; Rich Grenyer; Matthew R Helmus; Lanna S Jin; Arne O Mooers; Sandrine Pavoine; Oliver Purschke; David W Redding; Dan F Rosauer; Marten Winter; Florent Mazel
Journal:  Biol Rev Camb Philos Soc       Date:  2016-01-20

9.  Animating and exploring phylogenies with fibre plots.

Authors:  William D Pearse
Journal:  F1000Res       Date:  2016-11-29

10.  The role of environment, dispersal and competition in explaining reduced co-occurrence among related species.

Authors:  Ben G Weinstein; Catherine H Graham; Juan Luis Parra
Journal:  PLoS One       Date:  2017-11-03       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.