Literature DB >> 25945571

REdiii: a pipeline for automated structure solution.

Markus Frederik Bohn1, Celia A Schiffer1.   

Abstract

High-throughput crystallographic approaches require integrated software solutions to minimize the need for manual effort. REdiii is a system that allows fully automated crystallographic structure solution by integrating existing crystallographic software into an adaptive and partly autonomous workflow engine. The program can be initiated after collecting the first frame of diffraction data and is able to perform processing, molecular-replacement phasing, chain tracing, ligand fitting and refinement without further user intervention. Preset values for each software component allow efficient progress with high-quality data and known parameters. The adaptive workflow engine can determine whether some parameters require modifications and choose alternative software strategies in case the preconfigured solution is inadequate. This integrated pipeline is targeted at providing a comprehensive and efficient approach to screening for ligand-bound co-crystal structures while minimizing repetitiveness and allowing a high-throughput scientific discovery process.

Keywords:  REdiii; automated structure solution

Mesh:

Substances:

Year:  2015        PMID: 25945571      PMCID: PMC4427196          DOI: 10.1107/S139900471500303X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  21 in total

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9.  Crystallographic refinement of ligand complexes.

Authors:  Gerard J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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