Literature DB >> 25940073

Spinach RNA aptamer detects lead(II) with high selectivity.

Saurja DasGupta1, Sandip A Shelke, Nan-sheng Li, Joseph A Piccirilli.   

Abstract

Spinach RNA aptamer contains a G-quadruplex motif that serves as a platform for binding and fluorescence activation of a GFP-like fluorophore. Here we show that Pb(2+) induces formation of Spinach's G-quadruplex and activates fluorescence with high selectivity and sensitivity. This device establishes the first example of an RNA-based sensor that provides a simple and inexpensive tool for Pb(2+) detection.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25940073      PMCID: PMC4755583          DOI: 10.1039/c5cc01526j

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  32 in total

1.  Fluorescence detection of lead(II) ions through their induced catalytic activity of DNAzymes.

Authors:  Chi-Lin Li; Kung-Tien Liu; Yang-Wei Lin; Huan-Tsung Chang
Journal:  Anal Chem       Date:  2010-12-09       Impact factor: 6.986

2.  Observation of the coexistence of sodium and calcium ions in a DNA G-quadruplex ion channel.

Authors:  Michael P H Lee; Gary N Parkinson; Pascale Hazel; Stephen Neidle
Journal:  J Am Chem Soc       Date:  2007-07-28       Impact factor: 15.419

3.  Universal aptamer-based real-time monitoring of enzymatic RNA synthesis.

Authors:  Katharina Höfer; Lisa V Langejürgen; Andres Jäschke
Journal:  J Am Chem Soc       Date:  2013-09-04       Impact factor: 15.419

4.  DNAzyme-based highly sensitive electronic detection of lead via quantum dot-assembled amplification labels.

Authors:  Haixia Zhang; Bingying Jiang; Yun Xiang; Jiao Su; Yaqin Chai; Ruo Yuan
Journal:  Biosens Bioelectron       Date:  2011-07-18       Impact factor: 10.618

5.  A simple, stable and picomole level lead sensor fabricated on DNA-based carbon hybridized TiO(2) nanotube arrays.

Authors:  Meichuan Liu; Guohua Zhao; Yiting Tang; Zhimin Yu; Yanzhu Lei; Mingfang Li; Yanan Zhang; Dongming Li
Journal:  Environ Sci Technol       Date:  2010-06-01       Impact factor: 9.028

6.  New highly sensitive and selective catalytic DNA biosensors for metal ions.

Authors:  Yi Lu; Juewen Liu; Jing Li; Peter J Bruesehoff; Caroline M-B Pavot; Andrea K Brown
Journal:  Biosens Bioelectron       Date:  2003-05       Impact factor: 10.618

7.  Easy-to-use dipstick tests for detection of lead in paints using non-cross-linked gold nanoparticle-DNAzyme conjugates.

Authors:  Debapriya Mazumdar; Juewen Liu; Geng Lu; Juanzuo Zhou; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2010-01-26       Impact factor: 6.222

8.  A novel and versatile sensing platform based on HRP-mimicking DNAzyme-catalyzed template-guided deposition of polyaniline.

Authors:  Feng Li; Limin Yang; Mingqin Chen; Yi Qian; Bo Tang
Journal:  Biosens Bioelectron       Date:  2012-10-02       Impact factor: 10.618

9.  Lead(II)-induced allosteric G-quadruplex DNAzyme as a colorimetric and chemiluminescence sensor for highly sensitive and selective Pb2+ detection.

Authors:  Tao Li; Erkang Wang; Shaojun Dong
Journal:  Anal Chem       Date:  2010-02-15       Impact factor: 6.986

10.  A Spinach molecular beacon triggered by strand displacement.

Authors:  Sanchita Bhadra; Andrew D Ellington
Journal:  RNA       Date:  2014-06-18       Impact factor: 4.942

View more
  9 in total

1.  Modifications of the chromophore of Spinach aptamer based on QM:MM calculations.

Authors:  Katarína Skúpa; Ján Urban
Journal:  J Mol Model       Date:  2017-02-02       Impact factor: 1.810

2.  Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures.

Authors:  Nanami Kikuchi; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-07-15       Impact factor: 3.164

3.  Hachimoji DNA and RNA: A genetic system with eight building blocks.

Authors:  Shuichi Hoshika; Nicole A Leal; Myong-Jung Kim; Myong-Sang Kim; Nilesh B Karalkar; Hyo-Joong Kim; Alison M Bates; Norman E Watkins; Holly A SantaLucia; Adam J Meyer; Saurja DasGupta; Joseph A Piccirilli; Andrew D Ellington; John SantaLucia; Millie M Georgiadis; Steven A Benner
Journal:  Science       Date:  2019-02-22       Impact factor: 47.728

4.  A highly sensitive and selective fluorescent probe without quencher for detection of Pb2+ ions based on aggregation-caused quenching phenomenon.

Authors:  Qianyun Li; Yongmei Jia; Zongcai Feng; Fang Liu
Journal:  RSC Adv       Date:  2018-11-19       Impact factor: 3.361

Review 5.  Light-Up RNA Aptamers and Their Cognate Fluorogens: From Their Development to Their Applications.

Authors:  Farah Bouhedda; Alexis Autour; Michael Ryckelynck
Journal:  Int J Mol Sci       Date:  2017-12-23       Impact factor: 5.923

6.  Programmable RNA detection with a fluorescent RNA aptamer using optimized three-way junction formation.

Authors:  Yuichi Furuhata; Mizuki Kobayashi; Ryo Maruyama; Yusuke Sato; Kurumi Makino; Tatsuo Michiue; Hiroharu Yui; Seiichi Nishizawa; Keitaro Yoshimoto
Journal:  RNA       Date:  2019-02-11       Impact factor: 4.942

7.  Single-tube isothermal label-free fluorescent sensor for pathogen detection based on genetic signatures.

Authors:  Mark A Reed; Yulia V Gerasimova
Journal:  Front Chem       Date:  2022-09-01       Impact factor: 5.545

Review 8.  G Quadruplex in Plants: A Ubiquitous Regulatory Element and Its Biological Relevance.

Authors:  Vikas Yadav; Nayun Kim; Narendra Tuteja; Puja Yadav
Journal:  Front Plant Sci       Date:  2017-07-04       Impact factor: 5.753

9.  Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.

Authors:  Sandip A Shelke; Yaming Shao; Artur Laski; Deepak Koirala; Benjamin P Weissman; James R Fuller; Xiaohong Tan; Tudor P Constantin; Alan S Waggoner; Marcel P Bruchez; Bruce A Armitage; Joseph A Piccirilli
Journal:  Nat Commun       Date:  2018-10-31       Impact factor: 14.919

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.