Literature DB >> 25937015

Cyclopropyl-containing positive allosteric modulators of metabotropic glutamate receptor subtype 5.

Sirish K Lakkaraju1, Hannah Mbatia1, Marie Hanscom2, Zaorui Zhao2, Junfang Wu2, Bogdan Stoica2, Alexander D MacKerell1, Alan I Faden2, Fengtian Xue3.   

Abstract

Positive allosteric modulators (PAMs) binding to the transmembrane (TM) domain of metabotropic glutamate receptor 5 (mGluR5) are promising therapeutic agents for psychiatric disorders and traumatic brain injury (TBI). Novel PAMs based on a trans-2-phenylcyclopropane amide scaffold have been designed and synthesized. Facilitating ligand design and allowing estimation of binding affinities to the mGluR5 TM domain was the novel computational strategy, site identification by ligand competitive saturation (SILCS). The potential protective activity of the new compounds was evaluated using nitric oxide (NO) production in BV2 microglial cell cultures treated with lipopolysaccharide (LPS), and the toxicity of the new compounds tested using a cell viability assay. One of the new compounds, 3a, indicated promising activity with potency of 30 μM, which is 4.5-fold more potent than its lead compound 3,3'-difluorobenzaldazine (DFB), and showed no detectable toxicity with concentrations as high as 1000 μM. Thus this compound represents a new lead for possible development as treatment for TBI and related neurodegenerative disorders.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Computer-aided drug design; Metabotropic glutamate receptor; Neuroprotection; Positive allosteric modulator; Traumatic brain injury

Mesh:

Substances:

Year:  2015        PMID: 25937015      PMCID: PMC4690453          DOI: 10.1016/j.bmcl.2015.04.042

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  39 in total

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4.  Structure of a class C GPCR metabotropic glutamate receptor 1 bound to an allosteric modulator.

Authors:  Huixian Wu; Chong Wang; Karen J Gregory; Gye Won Han; Hyekyung P Cho; Yan Xia; Colleen M Niswender; Vsevolod Katritch; Jens Meiler; Vadim Cherezov; P Jeffrey Conn; Raymond C Stevens
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5.  Gene expression profiling of experimental traumatic spinal cord injury as a function of distance from impact site and injury severity.

Authors:  Andrea De Biase; Susan M Knoblach; Simone Di Giovanni; Chenguang Fan; Annamaria Molon; Eric P Hoffman; Alan I Faden
Journal:  Physiol Genomics       Date:  2005-06-07       Impact factor: 3.107

6.  The role of excitatory amino acids and NMDA receptors in traumatic brain injury.

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7.  Computational fragment-based binding site identification by ligand competitive saturation.

Authors:  Olgun Guvench; Alexander D MacKerell
Journal:  PLoS Comput Biol       Date:  2009-07-10       Impact factor: 4.475

8.  A family of highly selective allosteric modulators of the metabotropic glutamate receptor subtype 5.

Authors:  Julie A O'Brien; Wei Lemaire; Tsing-Bau Chen; Raymond S L Chang; Marlene A Jacobson; Sookhee N Ha; Craig W Lindsley; Hervé J Schaffhauser; Cyrille Sur; Douglas J Pettibone; P Jeffrey Conn; David L Williams
Journal:  Mol Pharmacol       Date:  2003-09       Impact factor: 4.436

9.  Activation of metabotropic glutamate receptor 5 modulates microglial reactivity and neurotoxicity by inhibiting NADPH oxidase.

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Journal:  J Biol Chem       Date:  2009-04-13       Impact factor: 5.157

10.  Structure-activity relationships of new agonists and antagonists of different metabotropic glutamate receptor subtypes.

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  6 in total

Review 1.  Driving Structure-Based Drug Discovery through Cosolvent Molecular Dynamics.

Authors:  Phani Ghanakota; Heather A Carlson
Journal:  J Med Chem       Date:  2016-08-17       Impact factor: 7.446

2.  Optimization and Evaluation of Site-Identification by Ligand Competitive Saturation (SILCS) as a Tool for Target-Based Ligand Optimization.

Authors:  Vincent D Ustach; Sirish Kaushik Lakkaraju; Sunhwan Jo; Wenbo Yu; Wenjuan Jiang; Alexander D MacKerell
Journal:  J Chem Inf Model       Date:  2019-05-08       Impact factor: 4.956

3.  Identification and characterization of fragment binding sites for allosteric ligand design using the site identification by ligand competitive saturation hotspots approach (SILCS-Hotspots).

Authors:  Alexander D MacKerell; Sunhwan Jo; Sirish Kaushik Lakkaraju; Christoffer Lind; Wenbo Yu
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4.  Estimation of relative free energies of binding using pre-computed ensembles based on the single-step free energy perturbation and the site-identification by Ligand competitive saturation approaches.

Authors:  E Prabhu Raman; Sirish Kaushik Lakkaraju; Rajiah Aldrin Denny; Alexander D MacKerell
Journal:  J Comput Chem       Date:  2016-10-26       Impact factor: 3.376

5.  Virtual Screening and Molecular Dynamics Study of Potential Negative Allosteric Modulators of mGluR1 from Chinese Herbs.

Authors:  Ludi Jiang; Xianbao Zhang; Xi Chen; Yusu He; Liansheng Qiao; Yanling Zhang; Gongyu Li; Yuhong Xiang
Journal:  Molecules       Date:  2015-07-15       Impact factor: 4.411

6.  Modeling Epac1 interactions with the allosteric inhibitor AM-001 by co-solvent molecular dynamics.

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Journal:  J Comput Aided Mol Des       Date:  2020-07-22       Impact factor: 3.686

  6 in total

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