Literature DB >> 25931565

DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links.

Markus Räschle1, Godelieve Smeenk2, Rebecca K Hansen2, Tikira Temu1, Yasuyoshi Oka2, Marco Y Hein1, Nagarjuna Nagaraj1, David T Long3, Johannes C Walter3, Kay Hofmann4, Zuzana Storchova5, Jürgen Cox1, Simon Bekker-Jensen6, Niels Mailand6, Matthias Mann7.   

Abstract

DNA interstrand cross-links (ICLs) block replication fork progression by inhibiting DNA strand separation. Repair of ICLs requires sequential incisions, translesion DNA synthesis, and homologous recombination, but the full set of factors involved in these transactions remains unknown. We devised a technique called chromatin mass spectrometry (CHROMASS) to study protein recruitment dynamics during perturbed DNA replication in Xenopus egg extracts. Using CHROMASS, we systematically monitored protein assembly and disassembly on ICL-containing chromatin. Among numerous prospective DNA repair factors, we identified SLF1 and SLF2, which form a complex with RAD18 and together define a pathway that suppresses genome instability by recruiting the SMC5/6 cohesion complex to DNA lesions. Our study provides a global analysis of an entire DNA repair pathway and reveals the mechanism of SMC5/6 relocalization to damaged DNA in vertebrate cells.
Copyright © 2015, American Association for the Advancement of Science.

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Year:  2015        PMID: 25931565      PMCID: PMC5331883          DOI: 10.1126/science.1253671

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  38 in total

Review 1.  Competition, collaboration and coordination--determining how cells bypass DNA damage.

Authors:  Julian E Sale
Journal:  J Cell Sci       Date:  2012-04-12       Impact factor: 5.285

2.  Tandem protein interaction modules organize the ubiquitin-dependent response to DNA double-strand breaks.

Authors:  Stephanie Panier; Yosuke Ichijima; Amélie Fradet-Turcotte; Charles C Y Leung; Lilia Kaustov; Cheryl H Arrowsmith; Daniel Durocher
Journal:  Mol Cell       Date:  2012-06-27       Impact factor: 17.970

3.  SHPRH and HLTF act in a damage-specific manner to coordinate different forms of postreplication repair and prevent mutagenesis.

Authors:  Jia-Ren Lin; Michelle K Zeman; Jia-Yun Chen; Muh-Ching Yee; Karlene A Cimprich
Journal:  Mol Cell       Date:  2011-03-10       Impact factor: 17.970

4.  FANCM connects the genome instability disorders Bloom's Syndrome and Fanconi Anemia.

Authors:  Andrew J Deans; Stephen C West
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

5.  During replication stress, non-SMC element 5 (NSE5) is required for Smc5/6 protein complex functionality at stalled forks.

Authors:  Denise E Bustard; Demis Menolfi; Kristian Jeppsson; Lindsay G Ball; Sidney Carter Dewey; Katsuhiko Shirahige; Camilla Sjögren; Dana Branzei; Jennifer A Cobb
Journal:  J Biol Chem       Date:  2012-02-02       Impact factor: 5.157

6.  SMC5 and SMC6 genes are required for the segregation of repetitive chromosome regions.

Authors:  Jordi Torres-Rosell; Félix Machín; Sarah Farmer; Adam Jarmuz; Trevor Eydmann; Jacob Z Dalgaard; Luis Aragón
Journal:  Nat Cell Biol       Date:  2005-03-27       Impact factor: 28.824

7.  Brc1-mediated rescue of Smc5/6 deficiency: requirement for multiple nucleases and a novel Rad18 function.

Authors:  Karen M Lee; Suzanne Nizza; Thomas Hayes; Kirstin L Bass; Anja Irmisch; Johanne M Murray; Matthew J O'Connell
Journal:  Genetics       Date:  2007-02-04       Impact factor: 4.562

8.  RAD18 transmits DNA damage signalling to elicit homologous recombination repair.

Authors:  Jun Huang; Michael S Y Huen; Hongtae Kim; Charles Chung Yun Leung; J N Mark Glover; Xiaochun Yu; Junjie Chen
Journal:  Nat Cell Biol       Date:  2009-04-26       Impact factor: 28.824

9.  The Fanconi anemia pathway promotes replication-dependent DNA interstrand cross-link repair.

Authors:  Puck Knipscheer; Markus Räschle; Agata Smogorzewska; Milica Enoiu; The Vinh Ho; Orlando D Schärer; Stephen J Elledge; Johannes C Walter
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728

10.  Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

Authors:  Jürgen Cox; Marco Y Hein; Christian A Luber; Igor Paron; Nagarjuna Nagaraj; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2014-06-17       Impact factor: 5.911

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  92 in total

1.  Mutagenic Bypass of an Oxidized Abasic Lesion-Induced DNA Interstrand Cross-Link Analogue by Human Translesion Synthesis DNA Polymerases.

Authors:  Wenyan Xu; Adam Ouellette; Souradyuti Ghosh; Tylor C O'Neill; Marc M Greenberg; Linlin Zhao
Journal:  Biochemistry       Date:  2015-12-14       Impact factor: 3.162

Review 2.  DNA replication stress: from molecular mechanisms to human disease.

Authors:  Sergio Muñoz; Juan Méndez
Journal:  Chromosoma       Date:  2016-01-21       Impact factor: 4.316

3.  DNA Repair Network Analysis Reveals Shieldin as a Key Regulator of NHEJ and PARP Inhibitor Sensitivity.

Authors:  Rajat Gupta; Kumar Somyajit; Takeo Narita; Elina Maskey; Andre Stanlie; Magdalena Kremer; Dimitris Typas; Michael Lammers; Niels Mailand; Andre Nussenzweig; Jiri Lukas; Chunaram Choudhary
Journal:  Cell       Date:  2018-04-12       Impact factor: 41.582

Review 4.  Cell-free Xenopus egg extracts for studying DNA damage response pathways.

Authors:  Steven Cupello; Christine Richardson; Shan Yan
Journal:  Int J Dev Biol       Date:  2016       Impact factor: 2.203

5.  Proteomics reveals a new DNA repair factor involved in DNA damage signaling.

Authors:  Markus Räschle
Journal:  Mol Cell Oncol       Date:  2016-11-29

6.  Brc1 Promotes the Focal Accumulation and SUMO Ligase Activity of Smc5-Smc6 during Replication Stress.

Authors:  Martina Oravcová; Mariana C Gadaleta; Minghua Nie; Michael C Reubens; Oliver Limbo; Paul Russell; Michael N Boddy
Journal:  Mol Cell Biol       Date:  2019-01-03       Impact factor: 4.272

7.  DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy.

Authors:  Martin V Bennetzen; Martin Kosar; Jakob Bunkenborg; Mark Ronald Payne; Jirina Bartkova; Mikael S Lindström; Jiri Lukas; Jens S Andersen; Jiri Bartek; Dorthe Helena Larsen
Journal:  Cell Cycle       Date:  2018-09-22       Impact factor: 4.534

Review 8.  Regulation of DNA double-strand break repair by ubiquitin and ubiquitin-like modifiers.

Authors:  Petra Schwertman; Simon Bekker-Jensen; Niels Mailand
Journal:  Nat Rev Mol Cell Biol       Date:  2016-05-23       Impact factor: 94.444

9.  Replication-Dependent Unhooking of DNA Interstrand Cross-Links by the NEIL3 Glycosylase.

Authors:  Daniel R Semlow; Jieqiong Zhang; Magda Budzowska; Alexander C Drohat; Johannes C Walter
Journal:  Cell       Date:  2016-09-29       Impact factor: 41.582

Review 10.  Recruitment, loading, and activation of the Smc5-Smc6 SUMO ligase.

Authors:  Martina Oravcová; Michael N Boddy
Journal:  Curr Genet       Date:  2019-01-02       Impact factor: 3.886

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