| Literature DB >> 25918672 |
Junichiro Marui1, Sayvisene Boulom2, Wanchai Panthavee3, Mari Momma1, Ken-Ichi Kusumoto4, Kazuhiko Nakahara1, Masayoshi Saito1.
Abstract
A bacterial community analysis, using a culture-independent method (polymerase chain reaction-denaturing gradient gel electrophoresis), detected 17 species of bacteria including species of the genera Tetragenococcus, Lactobacillus, Pediococcus, Weissella Halanaerobium, Clostridium, and Sphingomonas in a traditional salty-fermented fish paste known as pla-ra or pa-daek in Thailand and Laos, which is used as a storage-stable multi-purpose seasoning. The representative genus of lactic acid bacteria seemed to vary in the 10 products collected from Thailand and Laos. Tetragenococci were common in products from central Thailand and Vientiane in Laos which had salinities of not less than 11% and pH values ranging from 5.6 to 6.1. However, lactobacilli were common in products from northern Thailand which had the lowest salinities (8.3-8.6%) and pH values (4.5-4.8) of all the samples examined. Two Lactobacillus and one Tetragenococcus species were detected in one product from northeastern Thailand containing 10% salt. These results suggest that salinity in pla-ra/pa-daek is an important determinant of the representative genus of lactic acid bacteria such as, Tetragenococcus or Lactobacillus. Additionally, differences in the acidity between these two groups seemed to be related to the production of d-/l-lactic acid in the lactic acid bacteria in each product. This is the first study to report a correlation between bacterial community structure and taste components in pla-ra/pa-daek products from various regions. This scientific work on a traditional fermented food will be useful in helping local producers meet differing consumer preferences in various regions.Entities:
Keywords: PCR-DGGE; bacterial community; fermented fish; lactic acid bacteria; pa-daek; pla-ra
Year: 2015 PMID: 25918672 PMCID: PMC4405397 DOI: 10.12938/bmfh.2014-018
Source DB: PubMed Journal: Biosci Microbiota Food Health ISSN: 2186-3342
Production region, fish material, and fermentaion period of products used in this study
| Sample number | Province | Region | Local name of fish materials used with academic names in parenthesis* | fermentation period |
| 1 | Suphanburi | Central Thailand | Pla chon ( | 1 year |
| 2 | Singburi | Central Thailand | Pla ka di ( | 1 year |
| 3 | Sukhothai | Northern Thailand | Mixture of small-sized fish | 1 year |
| 4 | Sukhothai | Northern Thailand | Mixture of small-sized fish | 1 year |
| 5 | Sukhothai | Northern Thailand | Pla ka di ( | 1 year |
| 6 | Khon Kaen | Northeastern Thailand | Mixture of small-sized fish | 1 year |
| 7 | Vientiane | Laos | Mixture of small-sized fish | 10 months |
| 8 | Vientiane | Laos | Pa keng ( | 1 year |
| 9 | Vientiane | Laos | Mixture of small-sized fish | 1 year |
| 10 | Vientiane | Laos | Mixture of small-sized fish | 1 year |
* “small-sized” approximately 10 cm or smaller.
Salinity, pH, and d-/l-lactic acid content
| Sample number | Salinity (%) | pH | Total lactic acid | DGGE bands detetcted | ||
| 1 | 12.3 | 5.7 | 0.02 | 0.86 | 0.88 | a*, b*, c*, d*, e*, f* |
| 2 | 11.3 | 5.6 | 0.18 | 0.29 | 0.47 | b*, c*, g* |
| 3 | 8.3 | 4.8 | 1.22 | 1.22 | 2.44 | h, i, j, k*, l |
| 4 | 8.4 | 4.6 | 1.58 | 1.49 | 3.08 | h*, i, j, k, l, m*, n*, o* |
| 5 | 8.6 | 4.5 | 1.13 | 1.46 | 2.58 | h, i*, j*, k*, l*, m, o, p* |
| 6 | 10.3 | 4.9 | 0.47 | 1.22 | 1.69 | h*, g*, k |
| 7 | 15.3 | 5.7 | 0.04 | 0.58 | 0.62 | a*, b*, e, g*, k* |
| 8 | 20.3 | 5.7 | 0.16 | 0.37 | 0.53 | a*, b, c*, e, g*, q* |
| 9 | 16.7 | 5.9 | 0.20 | 0.55 | 0.75 | b, e*, g*, q |
| 10 | 18.3 | 6.1 | 0.18 | 0.22 | 0.40 | a, b, c, e, g |
Values shown are the means of three measurements. pH was measured in one tenth diluted samples. d-/l-lactic acid contents are showned as g/100 g sample. The bands that were isolated and subjected to nucleotide sequence analysis are indicated by asterisks (*).
Fig. 1.PCR-DGGE profiles of the bacterial communities in pla-ra and pa-daek. The PCR products from samples 1 to 10 presented in Table 1 are shown in lanes 1 to 10, respectively. The representative DGGE band in each mobility group is indicated by lower-case letters. The nucleotide sequence of the bands indicated in Table 3 was subjected to a homology search against a 16S rRNA sequence database.
Homology search results for the DNA fragments from selected DGGE bands
| Band | Highest match(es) | Accession number | Identity (%) |
| a | NR113915.1 | 99 | |
| NR116418.1 | 99 | ||
| NR025887.1 | 99 | ||
| b | NR113915.1 | 100 | |
| NR116418.1 | 100 | ||
| NR025887.1 | 100 | ||
| c | NR024715.1 | 100 | |
| d | NR113381.1 | 100 | |
| NR117767.1 | 100 | ||
| NR024749.1 | 100 | ||
| NR119281.1 | 100 | ||
| e* | NR117716.1 | 100 | |
| f | NR114863.1 | 100 | |
| NR044942.1 | 100 | ||
| NR104768.1 | 100 | ||
| NR026336.1 | 100 | ||
| NR118727.1 | 100 | ||
| g | NR108208.1 | 100 | |
| h | NR112693.1 | 99 | |
| NR024718.1 | 99 | ||
| i | NR112693.1 | 100 | |
| j | NR042195.1 | 99 | |
| k | NR042195.1 | 100 | |
| l | NR042195.1 | 99 | |
| m | NR044759.1 | 100 | |
| NR040815.1 | 100 | ||
| NR113775.1 | 100 | ||
| NR119224.1 | 100 | ||
| n | NR075052.1 | 100 | |
| NR042058.1 | 100 | ||
| NR042623.1 | 100 | ||
| o | NR117973.1 | 100 | |
| NR114398.1 | 100 | ||
| NR109370.1 | 100 | ||
| p | NR042195.1 | 99 | |
| q | NR115655.1 | 100 |
*Another 33 Sphingomonas, 15 Sphingobium, 9 Sphingopyxis, 2 Erythrobacter, 1 Altererythrobacter, 1 Novosphingobium and 1 Stakelama species were matched with 100% identity (data not shown).