Literature DB >> 25916709

Determination of deoxyribonucleoside triphosphate concentrations in yeast cells by strong anion-exchange high-performance liquid chromatography coupled with ultraviolet detection.

Shaodong Jia1, Lisette Marjavaara, Robert Buckland, Sushma Sharma, Andrei Chabes.   

Abstract

DNA polymerase assays are commonly used for the detection of deoxyribonucleoside triphosphates (dNTPs) in biological samples. For better specificity and accuracy, high-performance liquid chromatography (HPLC) methods have been developed for the analysis of the four dNTPs in complex samples. Here we describe a simple method using isocratic strong anion-exchange (SAX) chromatographic separation coupled with ultraviolet detection (UV) for the analysis of the four dNTPs in budding yeast Saccharomyces cerevisiae. This method can be applied to other species of yeast or bacteria.

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Year:  2015        PMID: 25916709     DOI: 10.1007/978-1-4939-2596-4_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  Mrc1 and Rad9 cooperate to regulate initiation and elongation of DNA replication in response to DNA damage.

Authors:  Julien Bacal; María Moriel-Carretero; Benjamin Pardo; Antoine Barthe; Sushma Sharma; Andrei Chabes; Armelle Lengronne; Philippe Pasero
Journal:  EMBO J       Date:  2018-08-29       Impact factor: 11.598

2.  A user-friendly, high-throughput tool for the precise fluorescent quantification of deoxyribonucleoside triphosphates from biological samples.

Authors:  Judit Eszter Szabó; Éva Viola Surányi; Bence Sándor Mébold; Tamás Trombitás; Mihály Cserepes; Judit Tóth
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

3.  De novo dNTP production is essential for normal postnatal murine heart development.

Authors:  Phong Tran; Paulina H Wanrooij; Paolo Lorenzon; Sushma Sharma; Lars Thelander; Anna Karin Nilsson; Anna-Karin Olofsson; Paolo Medini; Jonas von Hofsten; Per Stål; Andrei Chabes
Journal:  J Biol Chem       Date:  2019-07-12       Impact factor: 5.157

4.  Ribonucleotides incorporated by the yeast mitochondrial DNA polymerase are not repaired.

Authors:  Paulina H Wanrooij; Martin K M Engqvist; Josefin M E Forslund; Clara Navarrete; Anna Karin Nilsson; Juhan Sedman; Sjoerd Wanrooij; Anders R Clausen; Andrei Chabes
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-06       Impact factor: 11.205

5.  Heterozygous colon cancer-associated mutations of SAMHD1 have functional significance.

Authors:  Matilda Rentoft; Kristoffer Lindell; Phong Tran; Anna Lena Chabes; Robert J Buckland; Danielle L Watt; Lisette Marjavaara; Anna Karin Nilsson; Beatrice Melin; Johan Trygg; Erik Johansson; Andrei Chabes
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

6.  Hydroxyurea-Mediated Cytotoxicity Without Inhibition of Ribonucleotide Reductase.

Authors:  Li Phing Liew; Zun Yi Lim; Matan Cohen; Ziqing Kong; Lisette Marjavaara; Andrei Chabes; Stephen D Bell
Journal:  Cell Rep       Date:  2016-11-01       Impact factor: 9.423

7.  Rnr1, but not Rnr3, facilitates the sustained telomerase-dependent elongation of telomeres.

Authors:  André Maicher; Inbal Gazy; Sushma Sharma; Lisette Marjavaara; Gilad Grinberg; Keren Shemesh; Andrei Chabes; Martin Kupiec
Journal:  PLoS Genet       Date:  2017-10-25       Impact factor: 5.917

8.  Acute Smc5/6 depletion reveals its primary role in rDNA replication by restraining recombination at fork pausing sites.

Authors:  Xiao P Peng; Shelly Lim; Shibai Li; Lisette Marjavaara; Andrei Chabes; Xiaolan Zhao
Journal:  PLoS Genet       Date:  2018-01-23       Impact factor: 5.917

9.  Genome-wide analysis of the specificity and mechanisms of replication infidelity driven by imbalanced dNTP pools.

Authors:  Danielle L Watt; Robert J Buckland; Scott A Lujan; Thomas A Kunkel; Andrei Chabes
Journal:  Nucleic Acids Res       Date:  2015-11-24       Impact factor: 16.971

10.  S phase block following MEC1ATR inactivation occurs without severe dNTP depletion.

Authors:  Caroline Earp; Samuel Rowbotham; Gábor Merényi; Andrei Chabes; Rita S Cha
Journal:  Biol Open       Date:  2015-11-24       Impact factor: 2.422

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