Literature DB >> 25915124

The histone deacetylase SIRT6 controls embryonic stem cell fate via TET-mediated production of 5-hydroxymethylcytosine.

Jean-Pierre Etchegaray1, Lukas Chavez2, Yun Huang2, Kenneth N Ross1, Jiho Choi1, Barbara Martinez-Pastor1, Ryan M Walsh1, Cesar A Sommer3, Matthias Lienhard2, Adrianne Gladden4, Sita Kugel1, Dafne M Silberman5, Sridhar Ramaswamy1, Gustavo Mostoslavsky3, Konrad Hochedlinger6, Alon Goren4, Anjana Rao2, Raul Mostoslavsky1.   

Abstract

How embryonic stem cells (ESCs) commit to specific cell lineages and yield all cell types of a fully formed organism remains a major question. ESC differentiation is accompanied by large-scale histone and DNA modifications, but the relations between these epigenetic categories are not understood. Here we demonstrate the interplay between the histone deacetylase sirtuin 6 (SIRT6) and the ten-eleven translocation enzymes (TETs). SIRT6 targets acetylated histone H3 at Lys 9 and 56 (H3K9ac and H3K56ac), while TETs convert 5-methylcytosine into 5-hydroxymethylcytosine (5hmC). ESCs derived from Sirt6 knockout (S6KO) mice are skewed towards neuroectoderm development. This phenotype involves derepression of OCT4, SOX2 and NANOG, which causes an upregulation of TET-dependent production of 5hmC. Genome-wide analysis revealed neural genes marked with 5hmC in S6KO ESCs, thereby implicating TET enzymes in the neuroectoderm-skewed differentiation phenotype. We demonstrate that SIRT6 functions as a chromatin regulator safeguarding the balance between pluripotency and differentiation through Tet-mediated production of 5hmC.

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Year:  2015        PMID: 25915124      PMCID: PMC4593707          DOI: 10.1038/ncb3147

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.824


  52 in total

1.  Modulation of mitochondrial biogenesis and bioenergetic metabolism upon in vitro and in vivo differentiation of human ES and iPS cells.

Authors:  Alessandro Prigione; James Adjaye
Journal:  Int J Dev Biol       Date:  2010       Impact factor: 2.203

2.  Analysis of pluripotent stem cells by using cryosections of embryoid bodies.

Authors:  Ismael C Gomes; Mariana Acquarone; Renata de Moraes Maciel; Rafael Bierig Erlich; Stevens K Rehen
Journal:  J Vis Exp       Date:  2010-12-08       Impact factor: 1.355

3.  Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.

Authors:  Kian Peng Koh; Akiko Yabuuchi; Sridhar Rao; Yun Huang; Kerrianne Cunniff; Julie Nardone; Asta Laiho; Mamta Tahiliani; Cesar A Sommer; Gustavo Mostoslavsky; Riitta Lahesmaa; Stuart H Orkin; Scott J Rodig; George Q Daley; Anjana Rao
Journal:  Cell Stem Cell       Date:  2011-02-04       Impact factor: 24.633

4.  The sirtuin SIRT6 deacetylates H3 K56Ac in vivo to promote genomic stability.

Authors:  Bo Yang; Bernadette M M Zwaans; Mark Eckersdorff; David B Lombard
Journal:  Cell Cycle       Date:  2009-08-22       Impact factor: 4.534

5.  Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA.

Authors:  Aleksandra Szwagierczak; Sebastian Bultmann; Christine S Schmidt; Fabio Spada; Heinrich Leonhardt
Journal:  Nucleic Acids Res       Date:  2010-08-04       Impact factor: 16.971

6.  Cell cycle-dependent deacetylation of telomeric histone H3 lysine K56 by human SIRT6.

Authors:  Eriko Michishita; Ronald A McCord; Lisa D Boxer; Matthew F Barber; Tao Hong; Or Gozani; Katrin F Chua
Journal:  Cell Cycle       Date:  2009-08-26       Impact factor: 4.534

7.  The histone deacetylase Sirt6 regulates glucose homeostasis via Hif1alpha.

Authors:  Lei Zhong; Agustina D'Urso; Debra Toiber; Carlos Sebastian; Ryan E Henry; Douangsone D Vadysirisack; Alexander Guimaraes; Brett Marinelli; Jakob D Wikstrom; Tomer Nir; Clary B Clish; Bhavapriya Vaitheesvaran; Othon Iliopoulos; Irwin Kurland; Yuval Dor; Ralph Weissleder; Orian S Shirihai; Leif W Ellisen; Joaquin M Espinosa; Raul Mostoslavsky
Journal:  Cell       Date:  2010-01-22       Impact factor: 41.582

8.  Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2.

Authors:  Myunggon Ko; Yun Huang; Anna M Jankowska; Utz J Pape; Mamta Tahiliani; Hozefa S Bandukwala; Jungeun An; Edward D Lamperti; Kian Peng Koh; Rebecca Ganetzky; X Shirley Liu; L Aravind; Suneet Agarwal; Jaroslaw P Maciejewski; Anjana Rao
Journal:  Nature       Date:  2010-12-09       Impact factor: 49.962

9.  The sequence read archive.

Authors:  Rasko Leinonen; Hideaki Sugawara; Martin Shumway
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

10.  Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.

Authors:  Shinsuke Ito; Ana C D'Alessio; Olena V Taranova; Kwonho Hong; Lawrence C Sowers; Yi Zhang
Journal:  Nature       Date:  2010-08-26       Impact factor: 49.962

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  72 in total

1.  Cell Fate by SIRT6 and TETs.

Authors:  Jean-Pierre Etchegaray; Raul Mostoslavsky
Journal:  Cell Cycle       Date:  2015-06-11       Impact factor: 4.534

Review 2.  SIRT6, a Mammalian Deacylase with Multitasking Abilities.

Authors:  Andrew R Chang; Christina M Ferrer; Raul Mostoslavsky
Journal:  Physiol Rev       Date:  2019-08-22       Impact factor: 37.312

3.  Epigenetic Regulation of Metabolism and Inflammation by Calorie Restriction.

Authors:  Diego Hernández-Saavedra; Laura Moody; Guanying Bianca Xu; Hong Chen; Yuan-Xiang Pan
Journal:  Adv Nutr       Date:  2019-05-01       Impact factor: 8.701

4.  As"SIRT"ing the role of an epigenetic modifier in hematopoietic stem cell homeostasis.

Authors:  Andrew Magimaidas; Rachit Badolia; Priyanka Madireddi; Dheeraj Bhavanasi
Journal:  Stem Cell Investig       Date:  2016-10-14

Review 5.  DNA methylation dynamics in neurogenesis.

Authors:  Zhiqin Wang; Beisha Tang; Yuquan He; Peng Jin
Journal:  Epigenomics       Date:  2016-03-07       Impact factor: 4.778

Review 6.  Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification.

Authors:  Keriayn N Smith; Sarah C Miller; Gabriele Varani; J Mauro Calabrese; Terry Magnuson
Journal:  Genetics       Date:  2019-12       Impact factor: 4.562

7.  A Chemical Biology Approach to Reveal Sirt6-targeted Histone H3 Sites in Nucleosomes.

Authors:  Wesley Wei Wang; Yu Zeng; Bo Wu; Alexander Deiters; Wenshe R Liu
Journal:  ACS Chem Biol       Date:  2016-05-17       Impact factor: 5.100

8.  SIRT6-mediated transcriptional suppression of Txnip is critical for pancreatic beta cell function and survival in mice.

Authors:  Kunhua Qin; Ning Zhang; Zhao Zhang; Michael Nipper; Zhenxin Zhu; Jake Leighton; Kexin Xu; Nicolas Musi; Pei Wang
Journal:  Diabetologia       Date:  2018-01-10       Impact factor: 10.122

Review 9.  Current understanding and future perspectives of the roles of sirtuins in the reprogramming and differentiation of pluripotent stem cells.

Authors:  Yi-Chao Hsu; Yu-Ting Wu; Chia-Ling Tsai; Yau-Huei Wei
Journal:  Exp Biol Med (Maywood)       Date:  2018-03

Review 10.  Sirtuin-dependent clock control: new advances in metabolism, aging and cancer.

Authors:  Selma Masri
Journal:  Curr Opin Clin Nutr Metab Care       Date:  2015-11       Impact factor: 4.294

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