PURPOSE: Feature tracking and 3D surface reconstruction are key enabling techniques to computer-assisted minimally invasive surgery. One of the major bottlenecks related to training and validation of new algorithms is the lack of large amounts of annotated images that fully capture the wide range of anatomical/scene variance in clinical practice. To address this issue, we propose a novel approach to obtaining large numbers of high-quality reference image annotations at low cost in an extremely short period of time. METHODS: The concept is based on outsourcing the correspondence search to a crowd of anonymous users from an online community (crowdsourcing) and comprises four stages: (1) feature detection, (2) correspondence search via crowdsourcing, (3) merging multiple annotations per feature by fitting Gaussian finite mixture models, (4) outlier removal using the result of the clustering as input for a second annotation task. RESULTS: On average, 10,000 annotations were obtained within 24 h at a cost of $100. The annotation of the crowd after clustering and before outlier removal was of expert quality with a median distance of about 1 pixel to a publically available reference annotation. The threshold for the outlier removal task directly determines the maximum annotation error, but also the number of points removed. CONCLUSIONS: Our concept is a novel and effective method for fast, low-cost and highly accurate correspondence generation that could be adapted to various other applications related to large-scale data annotation in medical image computing and computer-assisted interventions.
PURPOSE: Feature tracking and 3D surface reconstruction are key enabling techniques to computer-assisted minimally invasive surgery. One of the major bottlenecks related to training and validation of new algorithms is the lack of large amounts of annotated images that fully capture the wide range of anatomical/scene variance in clinical practice. To address this issue, we propose a novel approach to obtaining large numbers of high-quality reference image annotations at low cost in an extremely short period of time. METHODS: The concept is based on outsourcing the correspondence search to a crowd of anonymous users from an online community (crowdsourcing) and comprises four stages: (1) feature detection, (2) correspondence search via crowdsourcing, (3) merging multiple annotations per feature by fitting Gaussian finite mixture models, (4) outlier removal using the result of the clustering as input for a second annotation task. RESULTS: On average, 10,000 annotations were obtained within 24 h at a cost of $100. The annotation of the crowd after clustering and before outlier removal was of expert quality with a median distance of about 1 pixel to a publically available reference annotation. The threshold for the outlier removal task directly determines the maximum annotation error, but also the number of points removed. CONCLUSIONS: Our concept is a novel and effective method for fast, low-cost and highly accurate correspondence generation that could be adapted to various other applications related to large-scale data annotation in medical image computing and computer-assisted interventions.
Authors: Tan B Nguyen; Shijun Wang; Vishal Anugu; Natalie Rose; Matthew McKenna; Nicholas Petrick; Joseph E Burns; Ronald M Summers Journal: Radiology Date: 2012-01-24 Impact factor: 11.105
Authors: Benjamin L Ranard; Yoonhee P Ha; Zachary F Meisel; David A Asch; Shawndra S Hill; Lance B Becker; Anne K Seymour; Raina M Merchant Journal: J Gen Intern Med Date: 2013-07-11 Impact factor: 5.128
Authors: Lena Maier-Hein; Sven Mersmann; Daniel Kondermann; Christian Stock; Hannes Gotz Kenngott; Alexandro Sanchez; Martin Wagner; Anas Preukschas; Anna-Laura Wekerle; Stefanie Helfert; Sebastian Bodenstedt; Stefanie Speidel Journal: Med Image Comput Comput Assist Interv Date: 2014
Authors: Lena Maier-Hein; Sven Mersmann; Daniel Kondermann; Sebastian Bodenstedt; Alexandro Sanchez; Christian Stock; Hannes Gotz Kenngott; Mathias Eisenmann; Stefanie Speidel Journal: Med Image Comput Comput Assist Interv Date: 2014
Authors: L Maier-Hein; A Groch; A Bartoli; S Bodenstedt; G Boissonnat; P-L Chang; N T Clancy; D S Elson; S Haase; E Heim; J Hornegger; P Jannin; H Kenngott; T Kilgus; B Müller-Stich; D Oladokun; S Röhl; T R Dos Santos; H-P Schlemmer; A Seitel; S Speidel; M Wagner; D Stoyanov Journal: IEEE Trans Med Imaging Date: 2014-05-23 Impact factor: 10.048
Authors: Eric Heim; Tobias Roß; Alexander Seitel; Keno März; Bram Stieltjes; Matthias Eisenmann; Johannes Lebert; Jasmin Metzger; Gregor Sommer; Alexander W Sauter; Fides Regina Schwartz; Andreas Termer; Felix Wagner; Hannes Götz Kenngott; Lena Maier-Hein Journal: J Med Imaging (Bellingham) Date: 2018-09-08
Authors: Lena Maier-Hein; Matthias Eisenmann; Duygu Sarikaya; Keno März; Toby Collins; Anand Malpani; Johannes Fallert; Hubertus Feussner; Stamatia Giannarou; Pietro Mascagni; Hirenkumar Nakawala; Adrian Park; Carla Pugh; Danail Stoyanov; Swaroop S Vedula; Kevin Cleary; Gabor Fichtinger; Germain Forestier; Bernard Gibaud; Teodor Grantcharov; Makoto Hashizume; Doreen Heckmann-Nötzel; Hannes G Kenngott; Ron Kikinis; Lars Mündermann; Nassir Navab; Sinan Onogur; Tobias Roß; Raphael Sznitman; Russell H Taylor; Minu D Tizabi; Martin Wagner; Gregory D Hager; Thomas Neumuth; Nicolas Padoy; Justin Collins; Ines Gockel; Jan Goedeke; Daniel A Hashimoto; Luc Joyeux; Kyle Lam; Daniel R Leff; Amin Madani; Hani J Marcus; Ozanan Meireles; Alexander Seitel; Dogu Teber; Frank Ückert; Beat P Müller-Stich; Pierre Jannin; Stefanie Speidel Journal: Med Image Anal Date: 2021-11-18 Impact factor: 13.828