Literature DB >> 25894724

Quantum Chemistry Meets Spectroscopy for Astrochemistry: Increasing Complexity toward Prebiotic Molecules.

Vincenzo Barone, Malgorzata Biczysko, Cristina Puzzarini.   

Abstract

For many years, scientists suspected that the interstellar medium was too hostile for organic species and that only a few simple molecules could be formed under such extreme conditions. However, the detection of approximately 180 molecules in interstellar or circumstellar environments in recent decades has changed this view dramatically. A rich chemistry has emerged, and relatively complex molecules such as C60 and C70 are formed. Recently, researchers have also detected complex organic and potentially prebiotic molecules, such as amino acids, in meteorites and in other space environments. Those discoveries have further stimulated the debate on the origin of the building blocks of life in the universe. Many efforts continue to focus on the physical, chemical, and astrophysical processes by which prebiotic molecules can be formed in the interstellar dust and dispersed to Earth or to other planets.Spectroscopic techniques, which are widely used to infer information about molecular structure and dynamics, play a crucial role in the investigation of planetary atmosphere and the interstellar medium. Increasingly these astrochemical investigations are assisted by quantum-mechanical calculations of structures as well as spectroscopic and thermodynamic properties, such as transition frequencies and reaction enthalpies, to guide and support observations, line assignments, and data analysis in these new and chemically complicated situations. However, it has proved challenging to extend accurate quantum-chemical computational approaches to larger systems because of the unfavorable scaling with the number of degrees of freedom (both electronic and nuclear).In this Account, we show that it is now possible to compute physicochemical properties of building blocks of biomolecules with an accuracy rivaling that of the most sophisticated experimental techniques, and we summarize specific contributions from our groups. As a test case, we present the underlying computational machinery through the investigation of oxirane. We describe how we determine the molecular structure and then how we characterize the rotational and IR spectra, the most important issues for a correct theoretical description and a proper comparison with experiment. Next, we analyze the spectroscopic properties of representative building blocks of DNA bases (uracil and pyrimidine) and of proteins (glycine and glycine dipeptide analogue).Solvation, surface chemistry (dust fraction, adsorption, desorption), and inter- and intramolecular interactions, such as self-organization and self-interaction, are important molecular processes for understanding astrochemistry. Using the specific cases of uracil dimers and glycine adsorbed on silicon grains, we also illustrate approaches in which we treat different regions, interactions, or effects at different levels of sophistication.

Entities:  

Mesh:

Year:  2015        PMID: 25894724     DOI: 10.1021/ar5003285

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  11 in total

1.  Analysis of lowest energy transitions at TD-DFT of pyrene in vacuum and solvent.

Authors:  Eric L Graef; João B L Martins
Journal:  J Mol Model       Date:  2019-06-07       Impact factor: 1.810

2.  Spectroscopic Characterization of Key Aromatic Molecules: A Route toward The Origin of Life.

Authors:  Cristina Puzzarini; Alberto Baiardi; Julien Bloino; Vincenzo Barone; Thomas E Murphy; Dennis Drew; Ashraf Ali
Journal:  Astron J       Date:  2017-08-04       Impact factor: 6.263

3.  CC/DFT Route toward Accurate Structures and Spectroscopic Features for Observed and Elusive Conformers of Flexible Molecules: Pyruvic Acid as a Case Study.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Paola Cimino; Emanuele Penocchio; Cristina Puzzarini
Journal:  J Chem Theory Comput       Date:  2015-08-07       Impact factor: 6.006

4.  Simulation of Vacuum UV Absorption and Electronic Circular Dichroism Spectra of Methyl Oxirane: The Role of Vibrational Effects.

Authors:  Manuel Hodecker; Malgorzata Biczysko; Andreas Dreuw; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2016-05-26       Impact factor: 6.006

5.  Tuning the Ground State Symmetry of Acetylenyl Radicals.

Authors:  Tao Zeng; David Danovich; Sason Shaik; Nandini Ananth; Roald Hoffmann
Journal:  ACS Cent Sci       Date:  2015-08-11       Impact factor: 14.553

Review 6.  Data-Driven Astrochemistry: One Step Further within the Origin of Life Puzzle.

Authors:  Alexander Ruf; Louis L S d'Hendecourt; Philippe Schmitt-Kopplin
Journal:  Life (Basel)       Date:  2018-06-01

7.  The Role of State-of-the-Art Quantum-Chemical Calculations in Astrochemistry: Formation Route and Spectroscopy of Ethanimine as a Paradigmatic Case.

Authors:  Carmen Baiano; Jacopo Lupi; Nicola Tasinato; Cristina Puzzarini; Vincenzo Barone
Journal:  Molecules       Date:  2020-06-22       Impact factor: 4.411

8.  Structural features of the carbon-sulfur chemical bond: a semi-experimental perspective.

Authors:  Emanuele Penocchio; Marco Mendolicchio; Nicola Tasinato; Vincenzo Barone
Journal:  Can J Chem       Date:  2016-07-28       Impact factor: 1.118

9.  Reliable vibrational wavenumbers for C=O and N-H stretchings of isolated and hydrogen-bonded nucleic acid bases.

Authors:  Teresa Fornaro; Malgorzata Biczysko; Julien Bloino; Vincenzo Barone
Journal:  Phys Chem Chem Phys       Date:  2016-03-28       Impact factor: 3.676

10.  Anharmonic Effects on Vibrational Spectra Intensities: Infrared, Raman, Vibrational Circular Dichroism, and Raman Optical Activity.

Authors:  Julien Bloino; Malgorzata Biczysko; Vincenzo Barone
Journal:  J Phys Chem A       Date:  2015-12-01       Impact factor: 2.781

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.