Literature DB >> 25892741

Applications of Multiple Reaction Monitoring to Clinical Glycomics.

L Renee Ruhaak1, Carlito B Lebrilla1.   

Abstract

Multiple reaction monitoring or MRM is widely acknowledged for its accuracy of quantitation. The applications have mostly been in the analysis of small molecules and proteins, but its utility is expanding. Protein glycosylation was recently identified as a new paradigm in biomarker discovery for health and disease. A number of recent studies have now identified differential glycosylation patterns associated with health and disease states, including aging, pregnancy, pan class="Disease">rheumatoid arthritis and different types of pan class="Disease">cancer. While the use of MRM in clinical glycomics is still in its infancy, it can likely play a role in the quantitation of protein glycosylation in the clinical setting. Here, we aim to review the current advances in the nascent application of MRM in the field of glycomics.

Entities:  

Year:  2015        PMID: 25892741      PMCID: PMC4399967          DOI: 10.1007/s10337-014-2783-9

Source DB:  PubMed          Journal:  Chromatographia        ISSN: 0009-5893            Impact factor:   2.044


  51 in total

1.  Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasma.

Authors:  Michael A Kuzyk; Derek Smith; Juncong Yang; Tyra J Cross; Angela M Jackson; Darryl B Hardie; N Leigh Anderson; Christoph H Borchers
Journal:  Mol Cell Proteomics       Date:  2009-05-01       Impact factor: 5.911

Review 2.  Stable isotope labeling methods in protein profiling.

Authors:  Johan Lengqvist; AnnSofi Sandberg
Journal:  Methods Mol Biol       Date:  2013

3.  Targeted glycomics by selected reaction monitoring for highly sensitive glycan compositional analysis.

Authors:  Hongquan Zhang; Zhaohui Wang; Jacek Stupak; Othman Ghribi; Jonathan D Geiger; Qing Yan Liu; Jianjun Li
Journal:  Proteomics       Date:  2012-07-23       Impact factor: 3.984

4.  Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues.

Authors:  Yan Li; Yuan Tian; Taha Rezai; Amol Prakash; Mary F Lopez; Daniel W Chan; Hui Zhang
Journal:  Anal Chem       Date:  2010-12-08       Impact factor: 6.986

5.  Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis.

Authors:  Jacek R Wiśniewski; Matthias Mann
Journal:  Anal Chem       Date:  2012-03-01       Impact factor: 6.986

6.  Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS.

Authors:  Gargi Choudhary; Shiaw-Lin Wu; Paul Shieh; William S Hancock
Journal:  J Proteome Res       Date:  2003 Jan-Feb       Impact factor: 4.466

7.  Total plasma N-glycome changes during pregnancy.

Authors:  L Renee Ruhaak; Hae-Won Uh; André M Deelder; Radboud E J M Dolhain; M Wuhrer
Journal:  J Proteome Res       Date:  2014-02-25       Impact factor: 4.466

8.  N-glycosylation site occupancy in serum glycoproteins using multiple reaction monitoring liquid chromatography-mass spectrometry.

Authors:  Andreas J Hülsmeier; Patricie Paesold-Burda; Thierry Hennet
Journal:  Mol Cell Proteomics       Date:  2007-09-06       Impact factor: 5.911

9.  Integrated glycoproteomics demonstrates fucosylated serum paraoxonase 1 alterations in small cell lung cancer.

Authors:  Jung-Mo Ahn; Hye-Jin Sung; Yeon-Hee Yoon; Byung-Gyu Kim; Won Suk Yang; Cheolju Lee; Hae-Min Park; Bum-Jin Kim; Byung-Gee Kim; Soo-Youn Lee; Hyun-Joo An; Je-Yoel Cho
Journal:  Mol Cell Proteomics       Date:  2013-10-01       Impact factor: 5.911

10.  LC-MS profiling of N-Glycans derived from human serum samples for biomarker discovery in hepatocellular carcinoma.

Authors:  Tsung-Heng Tsai; Minkun Wang; Cristina Di Poto; Yunli Hu; Shiyue Zhou; Yi Zhao; Rency S Varghese; Yue Luo; Mahlet G Tadesse; Dina Hazem Ziada; Chirag S Desai; Kirti Shetty; Yehia Mechref; Habtom W Ressom
Journal:  J Proteome Res       Date:  2014-08-08       Impact factor: 4.466

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  12 in total

Review 1.  Recent Advances in the Analysis of Complex Glycoproteins.

Authors:  Stefan Gaunitz; Gabe Nagy; Nicola L B Pohl; Milos V Novotny
Journal:  Anal Chem       Date:  2016-11-23       Impact factor: 6.986

2.  Serum glycosylation characterization of osteonecrosis of the femoral head by mass spectrometry.

Authors:  Ting Song; Peng Chen; Carol Stroble; L Renee Ruhaak; Haibin Wang; Ziqi Li; Wei He; Carlito B Lebrilla
Journal:  Eur J Mass Spectrom (Chichester)       Date:  2017-12-09       Impact factor: 1.067

3.  Changes in the expression of N- and O-glycopeptides in patients with colorectal cancer and hepatocellular carcinoma quantified by full-MS scan FT-ICR and multiple reaction monitoring.

Authors:  Petra Darebna; Petr Novak; Radek Kucera; Ondrej Topolcan; Miloslav Sanda; Radoslav Goldman; Petr Pompach
Journal:  J Proteomics       Date:  2016-09-16       Impact factor: 4.044

Review 4.  Glycoproteomic markers of hepatocellular carcinoma-mass spectrometry based approaches.

Authors:  Jianhui Zhu; Elisa Warner; Neehar D Parikh; David M Lubman
Journal:  Mass Spectrom Rev       Date:  2018-11-25       Impact factor: 10.946

Review 5.  Glycans and glycoproteins as specific biomarkers for cancer.

Authors:  Muchena J Kailemia; Dayoung Park; Carlito B Lebrilla
Journal:  Anal Bioanal Chem       Date:  2016-09-03       Impact factor: 4.142

Review 6.  Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.

Authors:  L Renee Ruhaak; Gege Xu; Qiongyu Li; Elisha Goonatilleke; Carlito B Lebrilla
Journal:  Chem Rev       Date:  2018-03-19       Impact factor: 60.622

7.  In-depth characterization of non-human sialic acid (Neu5Gc) in human serum using label-free ZIC-HILIC/MRM-MS.

Authors:  Nari Seo; Jaekyoung Ko; Daum Lee; Heejin Jeong; Myung Jin Oh; Unyong Kim; Dong Ho Lee; Jaehan Kim; Yoon Jin Choi; Hyun Joo An
Journal:  Anal Bioanal Chem       Date:  2021-07-07       Impact factor: 4.142

8.  A site-specific map of the human plasma glycome and its age and gender-associated alterations.

Authors:  Alexander A Merleev; Dayoung Park; Yixuan Xie; Muchena J Kailemia; Gege Xu; L Renee Ruhaak; Kyoungmi Kim; Qiuting Hong; Qiongyu Li; Forum Patel; Yu-Jui Yvonne Wan; Alina I Marusina; Iannis E Adamopoulos; Nelvish N Lal; Anupum Mitra; Stephanie T Le; Michiko Shimoda; Guillaume Luxardi; Carlito B Lebrilla; Emanual Maverakis
Journal:  Sci Rep       Date:  2020-10-15       Impact factor: 4.379

Review 9.  Recent Advances in Clinical Glycoproteomics of Immunoglobulins (Igs).

Authors:  Rosina Plomp; Albert Bondt; Noortje de Haan; Yoann Rombouts; Manfred Wuhrer
Journal:  Mol Cell Proteomics       Date:  2016-03-23       Impact factor: 5.911

Review 10.  Protein Glycosylation Investigated by Mass Spectrometry: An Overview.

Authors:  Anna Illiano; Gabriella Pinto; Chiara Melchiorre; Andrea Carpentieri; Vincenza Faraco; Angela Amoresano
Journal:  Cells       Date:  2020-08-28       Impact factor: 6.600

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