Literature DB >> 25892032

The utility of genomic data for Plasmodium vivax population surveillance.

Rachel F Daniels, Benjamin L Rice, Noah M Daniels, Sarah K Volkman, Daniel L Hartl.   

Abstract

Genetic polymorphisms identified from genomic sequencing can be used to track changes in parasite populations through time. Such tracking is particularly informative when applying control strategies and evaluating their effectiveness. Using genomic approaches may also enable improved ability to categorise populations and to stratify them according to the likely effectiveness of intervention. Clinical applications of genomic approaches also allow relapses to be classified according to reinfection or recrudescence. These tools can be used not only to assess the effectiveness of malaria interventions but also to appraise the strategies for malaria elimination.

Entities:  

Keywords:  Elimination,; Eradication,; Genotyping; Malaria,; Plasmodium vivax,

Mesh:

Substances:

Year:  2015        PMID: 25892032      PMCID: PMC4455356          DOI: 10.1179/2047773215Y.0000000014

Source DB:  PubMed          Journal:  Pathog Glob Health        ISSN: 2047-7724            Impact factor:   2.894


  60 in total

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Authors:  J Kevin Baird
Journal:  Antimicrob Agents Chemother       Date:  2004-11       Impact factor: 5.191

2.  LookSeq: a browser-based viewer for deep sequencing data.

Authors:  Heinrich Magnus Manske; Dominic P Kwiatkowski
Journal:  Genome Res       Date:  2009-08-13       Impact factor: 9.043

3.  Plasmodium vivax clinical malaria is commonly observed in Duffy-negative Malagasy people.

Authors:  Didier Ménard; Céline Barnadas; Christiane Bouchier; Cara Henry-Halldin; Laurie R Gray; Arsène Ratsimbasoa; Vincent Thonier; Jean-François Carod; Olivier Domarle; Yves Colin; Olivier Bertrand; Julien Picot; Christopher L King; Brian T Grimberg; Odile Mercereau-Puijalon; Peter A Zimmerman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

4.  Use of massively parallel pyrosequencing to evaluate the diversity of and selection on Plasmodium falciparum csp T-cell epitopes in Lilongwe, Malawi.

Authors:  Jeffrey A Bailey; Tisungane Mvalo; Nagesh Aragam; Matthew Weiser; Seth Congdon; Debbie Kamwendo; Francis Martinson; Irving Hoffman; Steven R Meshnick; Jonathan J Juliano
Journal:  J Infect Dis       Date:  2012-05-02       Impact factor: 5.226

5.  Comparative genomics of the neglected human malaria parasite Plasmodium vivax.

Authors:  Jane M Carlton; John H Adams; Joana C Silva; Shelby L Bidwell; Hernan Lorenzi; Elisabet Caler; Jonathan Crabtree; Samuel V Angiuoli; Emilio F Merino; Paolo Amedeo; Qin Cheng; Richard M R Coulson; Brendan S Crabb; Hernando A Del Portillo; Kobby Essien; Tamara V Feldblyum; Carmen Fernandez-Becerra; Paul R Gilson; Amy H Gueye; Xiang Guo; Simon Kang'a; Taco W A Kooij; Michael Korsinczky; Esmeralda V-S Meyer; Vish Nene; Ian Paulsen; Owen White; Stuart A Ralph; Qinghu Ren; Tobias J Sargeant; Steven L Salzberg; Christian J Stoeckert; Steven A Sullivan; Marcio M Yamamoto; Stephen L Hoffman; Jennifer R Wortman; Malcolm J Gardner; Mary R Galinski; John W Barnwell; Claire M Fraser-Liggett
Journal:  Nature       Date:  2008-10-09       Impact factor: 49.962

6.  Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum.

Authors:  Neekesh V Dharia; Amar Bir Singh Sidhu; María Belén Cassera; Scott J Westenberger; Selina Er Bopp; Rich T Eastman; David Plouffe; Serge Batalov; Daniel J Park; Sarah K Volkman; Dyann F Wirth; Yingyao Zhou; David A Fidock; Elizabeth A Winzeler
Journal:  Genome Biol       Date:  2009-02-13       Impact factor: 13.583

7.  ApiDB: integrated resources for the apicomplexan bioinformatics resource center.

Authors:  Cristina Aurrecoechea; Mark Heiges; Haiming Wang; Zhiming Wang; Steve Fischer; Philippa Rhodes; John Miller; Eileen Kraemer; Christian J Stoeckert; David S Roos; Jessica C Kissinger
Journal:  Nucleic Acids Res       Date:  2006-11-10       Impact factor: 16.971

8.  Distinction of Plasmodium falciparum recrudescence and re-infection by MSP2 genotyping: a caution about unstandardized classification criteria.

Authors:  Petrica Rouse; Mtawa Ap Mkulama; Philip E Thuma; Sungano Mharakurwa
Journal:  Malar J       Date:  2008-09-23       Impact factor: 2.979

9.  A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking.

Authors:  Rachel Daniels; Sarah K Volkman; Danny A Milner; Nira Mahesh; Daniel E Neafsey; Daniel J Park; David Rosen; Elaine Angelino; Pardis C Sabeti; Dyann F Wirth; Roger C Wiegand
Journal:  Malar J       Date:  2008-10-29       Impact factor: 2.979

10.  Multidrug-resistant Plasmodium vivax associated with severe and fatal malaria: a prospective study in Papua, Indonesia.

Authors:  Emiliana Tjitra; Nicholas M Anstey; Paulus Sugiarto; Noah Warikar; Enny Kenangalem; Muhammad Karyana; Daniel A Lampah; Ric N Price
Journal:  PLoS Med       Date:  2008-06-17       Impact factor: 11.069

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  4 in total

Review 1.  Uncovering the transmission dynamics of Plasmodium vivax using population genetics.

Authors:  Alyssa E Barry; Andreea Waltmann; Cristian Koepfli; Celine Barnadas; Ivo Mueller
Journal:  Pathog Glob Health       Date:  2015-04-18       Impact factor: 2.894

2.  Complexity of Infection and Genetic Diversity in Cambodian Plasmodium vivax.

Authors:  Lindsey R Friedrich; Jean Popovici; Saorin Kim; Lek Dysoley; Peter A Zimmerman; Didier Menard; David Serre
Journal:  PLoS Negl Trop Dis       Date:  2016-03-28

3.  Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indonesia.

Authors:  Zuleima Pava; Agatha M Puspitasari; Angela Rumaseb; Irene Handayuni; Leily Trianty; Retno A S Utami; Yusrifar K Tirta; Faustina Burdam; Enny Kenangalem; Grennady Wirjanata; Steven Kho; Hidayat Trimarsanto; Nicholas M Anstey; Jeanne Rini Poespoprodjo; Rintis Noviyanti; Ric N Price; Jutta Marfurt; Sarah Auburn
Journal:  PLoS Negl Trop Dis       Date:  2020-05-07

4.  SNP barcodes provide higher resolution than microsatellite markers to measure Plasmodium vivax population genetics.

Authors:  Abebe A Fola; Eline Kattenberg; Zahra Razook; Dulcie Lautu-Gumal; Stuart Lee; Somya Mehra; Melanie Bahlo; James Kazura; Leanne J Robinson; Moses Laman; Ivo Mueller; Alyssa E Barry
Journal:  Malar J       Date:  2020-10-20       Impact factor: 2.979

  4 in total

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