| Literature DB >> 25890600 |
Qi Guo1, Marjanka K Schmidt1, Peter Kraft1, Sander Canisius1, Constance Chen1, Sofia Khan1, Jonathan Tyrer1, Manjeet K Bolla1, Qin Wang1, Joe Dennis1, Kyriaki Michailidou1, Michael Lush1, Siddhartha Kar1, Jonathan Beesley1, Alison M Dunning1, Mitul Shah1, Kamila Czene1, Hatef Darabi1, Mikael Eriksson1, Diether Lambrechts1, Caroline Weltens1, Karin Leunen1, Stig E Bojesen1, Børge G Nordestgaard1, Sune F Nielsen1, Henrik Flyger1, Jenny Chang-Claude1, Anja Rudolph1, Petra Seibold1, Dieter Flesch-Janys1, Carl Blomqvist1, Kristiina Aittomäki1, Rainer Fagerholm1, Taru A Muranen1, Fergus J Couch1, Janet E Olson1, Celine Vachon1, Irene L Andrulis1, Julia A Knight1, Gord Glendon1, Anna Marie Mulligan1, Annegien Broeks1, Frans B Hogervorst1, Christopher A Haiman1, Brian E Henderson1, Fredrick Schumacher1, Loic Le Marchand1, John L Hopper1, Helen Tsimiklis1, Carmel Apicella1, Melissa C Southey1, Angela Cox1, Simon S Cross1, Malcolm W R Reed1, Graham G Giles1, Roger L Milne1, Catriona McLean1, Robert Winqvist1, Katri Pylkäs1, Arja Jukkola-Vuorinen1, Mervi Grip1, Maartje J Hooning1, Antoinette Hollestelle1, John W M Martens1, Ans M W van den Ouweland1, Federik Marme1, Andreas Schneeweiss1, Rongxi Yang1, Barbara Burwinkel1, Jonine Figueroa1, Stephen J Chanock1, Jolanta Lissowska1, Elinor J Sawyer1, Ian Tomlinson1, Michael J Kerin1, Nicola Miller1, Hermann Brenner1, Aida Karina Dieffenbach1, Volker Arndt1, Bernd Holleczek1, Arto Mannermaa1, Vesa Kataja1, Veli-Matti Kosma1, Jaana M Hartikainen1, Jingmei Li1, Judith S Brand1, Keith Humphreys1, Peter Devilee1, Rob A E M Tollenaar1, Caroline Seynaeve1, Paolo Radice1, Paolo Peterlongo1, Bernardo Bonanni1, Paolo Mariani1, Peter A Fasching1, Matthias W Beckmann1, Alexander Hein1, Arif B Ekici1, Georgia Chenevix-Trench1, Rosemary Balleine1, Kelly-Anne Phillips1, Javier Benitez1, M Pilar Zamora1, Jose Ignacio Arias Perez1, Primitiva Menéndez1, Anna Jakubowska1, Jan Lubinski1, Katarzyna Jaworska-Bieniek1, Katarzyna Durda1, Ute Hamann1, Maria Kabisch1, Hans Ulrich Ulmer1, Thomas Rüdiger1, Sara Margolin1, Vessela Kristensen1, Silje Nord1, D Gareth Evans1, Jean E Abraham1, Helena M Earl1, Louise Hiller1, Janet A Dunn1, Sarah Bowden1, Christine Berg1, Daniele Campa1, W Ryan Diver1, Susan M Gapstur1, Mia M Gaudet1, Susan E Hankinson1, Robert N Hoover1, Anika Hüsing1, Rudolf Kaaks1, Mitchell J Machiela1, Walter Willett1, Myrto Barrdahl1, Federico Canzian1, Suet-Feung Chin1, Carlos Caldas1, David J Hunter1, Sara Lindstrom1, Montserrat García-Closas1, Per Hall1, Douglas F Easton1, Diana M Eccles1, Nazneen Rahman1, Heli Nevanlinna1, Paul D P Pharoah1.
Abstract
BACKGROUND: Survival after a diagnosis of breast cancer varies considerably between patients, and some of this variation may be because of germline genetic variation. We aimed to identify genetic markers associated with breast cancer-specific survival.Entities:
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Year: 2015 PMID: 25890600 PMCID: PMC4555642 DOI: 10.1093/jnci/djv081
Source DB: PubMed Journal: J Natl Cancer Inst ISSN: 0027-8874 Impact factor: 13.506
Summary of SNPs by levels of statistical significance in the final combined analysis, ER-negative and ER-positive case patients*
|
| All invasive case patients | ER-positive case patients | ER-negative case patients | |||
|---|---|---|---|---|---|---|
| Observed | Expected | Observed | Expected | Observed | Expected | |
| < 5x10-8 | 28 | 0 | 0 | 0 | 1 | 0 |
| < 1x10-7 | 31 | 0 | 0 | 0 | 3 | 1 |
| < 1x10-6 | 34 | 10 | 2 | 10 | 25 | 10 |
| < 1x10-5 | 134 | 97 | 75 | 98 | 292 | 100 |
| < 1x10-4 | 928 | 971 | 894 | 975 | 1164 | 1002 |
| < 1x10-3 | 9375 | 9707 | 10 509 | 9752 | 11 032 | 10 020 |
* ER = estrogen receptor; SNP = single nucleotide polymorphism.
Figure 1.Association plot for combined GWAS and COGS analyses for estrogen receptor (ER)–negative cases. The P values of the association between each single nucleotide polymorphism (SNP) and breast cancer survival were obtained by cox regression analyses with adjustment for principle components for each study and then combined. The y-axis shows the -log10 P values of each SNP analyzed, and the x-axis shows their chromosome position. The red horizontal line represents P = 5x10-8. All statistical tests were two-sided.
Figure 2.Quantile-Quantile (Q-Q) plot for the combined GWAS and COGS analyses for estrogen receptor (ER)–negative cases. The y-axis represents the observed -log10 P value, and the x-axis represents the expected -log10 P value. The red line represents the expected distribution under the null hypothesis of no association. All statistical tests were two-sided.