| Literature DB >> 25890003 |
Antti Tanskanen1,2,3, Heidi Taipale4,5, Marjaana Koponen4,5, Anna-Maija Tolppanen5,6, Sirpa Hartikainen4,5, Riitta Ahonen5, Jari Tiihonen7,8,9.
Abstract
BACKGROUND: Databases of prescription drug purchases are now widely used in pharmacoepidemiologic studies. Several methods have been used to generate drug use periods from drug purchases to investigate various aspects; e.g., to study associations between exposure and outcome. Typically, such methods have been fairly simplistic, with fixed assumptions of drug use pattern and or dose (for example, the assumed usage of 1 tablet per day). This paper describes a novel PRE2DUP method that constructs drug use periods from purchase histories, and verified by a validation based on an expert evaluation of the drug use periods generated by the method.Entities:
Mesh:
Substances:
Year: 2015 PMID: 25890003 PMCID: PMC4382934 DOI: 10.1186/s12911-015-0140-z
Source DB: PubMed Journal: BMC Med Inform Decis Mak ISSN: 1472-6947 Impact factor: 2.796
Figure 1The overall operation of PRE2DUP. Data is first preprocessed, and then drug use periods are calculated. New parameters are calculated iteratively, to improve the results. Green arrows show the work-flow around the core process. Red numbers link to particular sections in the text.
Figure 2The work-flow of the core process. Red arrows illustrate the retrieval of a person’s next purchase of the same ATC code. The blue background marks the processing of a person’s single purchase of an ATC code. The green background shows the processing of stockpiling. Red numbers link to particular sections in the text. Thin arrows present dataflow, bold arrows logic.
The number of expert-defined parameters in each ATC class
| 1st level ATC codes and common names | Number of ATC parameters | Number of vnr parameters |
|---|---|---|
| A: Alimentary tract and metabolism | 31 | 354 |
| B: Blood and blood forming organs | 10 | 74 |
| C: Cardiovascular system | 13 | |
| D: Dermatological drugs | 12 | |
| G: Genitourinary system and reproductive hormones | 8 | 43 |
| H: Systemic hormonal preparations, excluding reproductive hormones and insulins | 6 | |
| J: Antiinfectives for systemic use | 7 | |
| L: Antineoplastic and immunomodulating agents | 5 | |
| M: Musculoskeletal system | 12 | 519 |
| N: Nervous system | 15 | 989 |
| P: Antiparasitic products, insecticides and repellents | 5 | |
| R: Respiratory system | 13 | |
| S: Sensory organs | 15 | |
| V: Various ATC structures | 22 | |
| Total | 174 | 2226 |
Figure 3Refill length distribution of simvastatin (vnr 010940, 10 mg, 98 tablets, ATC C10AA01). The most common refill length (98 days) is the number of tablets in the package, which corresponds to a dosage of 0.33 DDD per day (as 1 tablet per day). Black bars are the original refill times and brownish bars joined ones.
An example of purchase history, consisting of five purchases; each of 10 DDDs and average dose is one DDD per day
| Purchase i | 1 | 2 | 3 | 4 | 5 |
|---|---|---|---|---|---|
| DDD | 10 | 10 | 10 | 10 | 10 |
| Days between i and i + 1 | 10 | 5 | 15 | 10 | NA |
| DDD per day to next purchase | 1,00 | 2,00 | 0,67 | 1,00 | NA |
| Sliding temporal average DDDAVGi | 1,09 | 1,33 | 0,80 | 0,92 | 1,00 |
| Calculated refill time length in days | 9,17 | 7,50 | 12,50 | 10,83 | 10,00 |
The second purchase shows a possible example of stockpiling and the third purchase suggests the use of this stock.
Purchases and drug use periods by ATC class among persons with Alzheimer’s disease in the MEDALZ-2005 data during years 2002-2009
| ATC CLASS | Purchases | Drug use periods | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| N | N | Number of purchases per drug use period | DDD of drug use period | Length in days | DDD per day | |||||
| Median | Mean | Median | Sum | Median | Mean | Median | Mean | |||
| A | 402,210 | 82,735 | 2 | 5 | 100 | 3,2475,207 | 150 | 418 | 0.85 | 1.00 |
| B | 116,233 | 19,422 | 3 | 6 | 200 | 7848,540 | 351 | 638 | 0.64 | 0.87 |
| C | 1,075,095 | 124,811 | 5 | 9 | 300 | 8,6698,771 | 573 | 864 | 0.60 | 0.78 |
| G | 130,913 | 21,662 | 3 | 6 | 133 | 8886,697 | 241 | 529 | 0.78 | 0.78 |
| H | 86,325 | 14,297 | 3 | 6 | 133 | 5062,266 | 253 | 615 | 0.60 | 0.76 |
| J | 155,495 | 94,577 | 1 | 2 | 8 | 2040,569 | 21 | 106 | 0.33 | 0.38 |
| L | 17,547 | 2,061 | 6 | 9 | 335 | 1308,533 | 566 | 778 | 0.80 | 0.81 |
| M | 202,855 | 70,855 | 1 | 3 | 33 | 1,0474,142 | 50 | 197 | 0.75 | 0.77 |
| N | 1,328,357 | 173,702 | 4 | 8 | 140 | 8,3409,222 | 320 | 596 | 0.68 | 0.75 |
| P | 3,445 | 1,366 | 1 | 3 | 6 | 95,713 | 15 | 217 | 0.40 | 0.42 |
| R | 117,953 | 29,594 | 1 | 4 | 64 | 7443,245 | 138 | 349 | 0.67 | 0.74 |
| OTHER | 156,657 | 68,757 | 1 | 2 | 0 | 5085,132 | 28 | 147 | 0.00 | 0.11 |
| TOTAL | 3,793,085 | 703,839 | 250,828,037 | |||||||
PRE2DUP created 703,839 drug use periods from 3,793,085 purchases. The total number of purchased DDDs was 250,828,037. OTHER included ATC classes D, S and V. The common names of ATC classes are found in Table 1.
Reviewers’ judgments on the correctness of placing a purchase in a correct drug use period (purchase test)
| Purchases | Reviewer HT | Total | |||
|---|---|---|---|---|---|
| Correct | Error | Not Solvable | |||
| Reviewer | Correct | 867 | 17 | 7 | 891 |
| MK | Error | 16 | 39 | 2 | 57 |
| Not Solvable | 14 | 9 | 29 | 52 | |
| Total | 897 | 65 | 38 | 1000 | |
Reviewers’ judgments on the correctness of drug use periods (drug use period test)
| Periods | Reviewer HT | Total | |||
|---|---|---|---|---|---|
| Correct | Error | Not Solvable | |||
| Reviewer MK | Correct | 635 | 36 | 10 | 681 |
| Error | 82 | 84 | 2 | 168 | |
| Not Solvable | 23 | 4 | 124 | 151 | |
| Total | 740 | 124 | 136 | 1000 | |
Distribution of reviewer judgments by ATC classes in the purchase test, which measured correct purchases in this drug use period
| Classification | Total N | % | ||||||
|---|---|---|---|---|---|---|---|---|
| Correct | Error | Non solvable | Correct | Error | Non solvable | |||
| ATC class | A | 89 | 2 | 1 | 92 | 97 | 2 | 1 |
| B | 44 | 0 | 0 | 44 | 100 | 0 | 0 | |
| C | 275 | 2 | 13 | 290 | 95 | 1 | 4 | |
| G | 37 | 1 | 0 | 38 | 97 | 3 | 0 | |
| H | 21 | 6 | 1 | 28 | 75 | 21 | 4 | |
| J | 28 | 12 | 0 | 40 | 70 | 30 | 0 | |
| M | 46 | 5 | 4 | 55 | 84 | 9 | 7 | |
| N | 325 | 8 | 4 | 337 | 96 | 2 | 1 | |
| R | 32 | 2 | 1 | 35 | 91 | 6 | 3 | |
| OTHER | 24 | 1 | 16 | 41 | 59 | 2 | 39 | |
| Total | 921 | 39 | 40 | 1000 | 92 | 4 | 4 | |
The category “OTHER” included classes D, L, P, S and V. These have been combined, due to the low numbers of purchases and poor data quality (high proportion of missing DDD values). The common names of ATC classes are found in Table 1.
Distribution of reviewer judgments by ATC classes on the correctness of drug use periods
| Classification | Total | % | ||||||
|---|---|---|---|---|---|---|---|---|
| Correct | Error | Not solvable | Correct | Error | Not solvable | |||
| ATC class | A | 117 | 7 | 5 | 129 | 91 | 5 | 4 |
| B | 24 | 2 | 0 | 26 | 92 | 8 | 0 | |
| C | 135 | 4 | 34 | 173 | 78 | 2 | 20 | |
| G | 32 | 7 | 0 | 39 | 82 | 18 | 0 | |
| H | 11 | 6 | 1 | 18 | 61 | 33 | 6 | |
| J | 104 | 43 | 0 | 147 | 71 | 29 | 0 | |
| M | 77 | 3 | 12 | 92 | 84 | 3 | 13 | |
| N | 217 | 5 | 2 | 224 | 97 | 2 | 1 | |
| R | 31 | 5 | 9 | 45 | 69 | 11 | 20 | |
| OTHER | 38 | 2 | 67 | 107 | 36 | 2 | 63 | |
| Total | 786 | 84 | 130 | 1000 | 79 | 8 | 13 | |
The category “OTHER” included classes D, L, P, S and V. These have been combined, due to the low numbers of purchases and poor data quality (high proportion of missing DDD values). The common names of ATC classes are found in Table 1.