| Literature DB >> 25889984 |
Hai-ling Zhang1, Jian-jun Zhao2, Xiu-li Chai3, Lei Zhang4, Xue Bai5, Bo Hu6, Hao Liu7, Dong-liang Zhang8, Ming Ye9, Wei Wu10, Xi-jun Yan11.
Abstract
BACKGROUND: As a key link between innate and adaptive immune responses, the interferon (IFN) system is the first line of defense against viral infection. IFN, and in particular, IFN-α, has been used clinically as an effective therapeutic agent for viral infections. However, different subtypes of IFN-α demonstrate distinct antiviral activity. Therefore, it is important to identify IFN-α subtypes with high antiviral activity for the development of genetically engineered antiviral drugs.Entities:
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Year: 2015 PMID: 25889984 PMCID: PMC4353462 DOI: 10.1186/s12917-015-0359-z
Source DB: PubMed Journal: BMC Vet Res ISSN: 1746-6148 Impact factor: 2.741
The 13 MiIFN-α subtypes cloned in this study
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| MiIFN-α1 | 20956 | EU863613 |
| MiIFN-α2 | 20999 | EU863614 |
| MiIFN-α3 | 20958 | EU863615 |
| MiIFN-α4 | 21031 | EU863616 |
| MiIFN-α5 | 21089 | EU863617 |
| MiIFN-α6 | 21204 | EU863618 |
| MiIFN-α7 | 21002 | EU863619 |
| MiIFN-α8 | 21032 | EU863620 |
| MiIFN-α9 | 21021 | EU863621 |
| MiIFN-α10 | 21146 | EU863622 |
| MiIFN-α11 | 21248 | EU863623 |
| MiIFN-α12 | 21060 | EU863624 |
| IFN-α13 | 20983 | EU091340 |
Homology (%) of amino acids and nucleotides among MiIFN-α subtypes
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| IFN-α1 | - | 99.3 | 97.0 | 95.0 | 96.3 | 94.5 | 94.7 | 94.7 | 93.8 | 94.7 | 94.3 | 96.1 | 95.4 |
| IFN-α2 | 98.4 | - | 96.6 | 95.7 | 97.0 | 95.2 | 94.7 | 94.9 | 94.0 | 94.3 | 94.0 | 95.7 | 95.0 |
| IFN-α3 | 94.7 | 94.1 | - | 96.3 | 96.8 | 94.7 | 96.3 | 96.6 | 95.7 | 96.3 | 95.2 | 98.0 | 95.6 |
| IFN-α4 | 90.4 | 92.0 | 93.0 | - | 98.8 | 98.4 | 96.5 | 96.3 | 95.4 | 96.6 | 95.0 | 95.7 | 96.1 |
| IFN-α5 | 93.0 | 94.7 | 93.6 | 97.3 | - | 97.2 | 97.0 | 96.1 | 95.2 | 97.0 | 95.6 | 95.6 | 96.1 |
| IFN-α6 | 89.3 | 90.9 | 91.4 | 98.4 | 95.7 | - | 95.2 | 95.0 | 94.3 | 95.0 | 96.3 | 94.7 | 95.6 |
| IFN-α7 | 91.4 | 90.9 | 93.0 | 93.6 | 94.1 | 92.5 | - | 96.8 | 96.3 | 97.9 | 97.2 | 95.2 | 96.3 |
| IFN-α8 | 90.9 | 90.9 | 94.1 | 92.5 | 92.0 | 91.4 | 94.1 | - | 99.1 | 95.9 | 94.3 | 97.3 | 95.6 |
| IFN-α9 | 89.3 | 89.3 | 92.5 | 90.9 | 90.4 | 89.8 | 93.6 | 98.4 | - | 95.0 | 93.6 | 96.5 | 94.7 |
| IFN-α10 | 91.4 | 90.9 | 94.1 | 94.7 | 95.2 | 93.0 | 96.8 | 92.0 | 90.4 | - | 97.2 | 96.3 | 96.3 |
| IFN-α11 | 89.8 | 89.3 | 92.0 | 92.5 | 93.0 | 94.1 | 95.2 | 90.4 | 88.8 | 96.8 | - | 94.9 | 95.7 |
| IFN-α12 | 93.0 | 92.5 | 97.3 | 92.5 | 92.0 | 91.4 | 92.0 | 95.2 | 93.6 | 93.6 | 92.0 | - | 95.6 |
| IFN-α13 | 91.4 | 90.9 | 91.4 | 92.0 | 92.5 | 91.4 | 93.6 | 90.4 | 88.8 | 93.6 | 93.0 | 90.4 | - |
“–” same sequence. The upper line shows identities at the nucleotide level; The lower line shows identities at the amino acid level. The sequences for alignment were from the following GenBank accession numbers: IFN-α1(MiIFN-α1, EU863613), IFN-α2 (MiIFN-α2, EU863614), IFN-α3 (MiIFN-α3, EU863615), IFN-α4 (MiIFN-α4, EU863616), IFN-α5 (MiIFN-α5, EU863617), IFN-α6 (MiIFN-α6, EU863618), IFN-α7(MiIFN-α7, EU863619), IFN-α8 (MiIFN-α8, EU863620), IFN-α9 (MiIFN-α9, EU863621), IFN-α10 (MiIFN-α10, EU863622), IFN-α11 (MiIFN-α11, EU863623), IFN-α12 (MiIFN-α12, EU863624), IFN-α13 (MiIFN-α13, EU091340).
Figure 1Analysis of amino acid sequences of 13 MiIFN-α subtypes. Red underlining indicates the predicted signal sequence of MiIFN-αs. Shaded areas represent the predicted cysteine residues, and boxed areas indicate potential N-glycosylation sites.
Figure 2Phylogenetic tree of IFN-α nucleotide sequences of several animal species.
Figure 3SDS-PAGE analysis of recombinant MiIFN-αs expressed in induced by IPTG (A). Western blot analysis of His-tag recombinant MiIFN-αs by 6-poly histidine monoclonal antibodies (B).
Primers used in MiIFN-α and mature peptide (mMiIFN-α) gene PCR assays
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| MiIFN-α1–13 | 564 | P1 5′-ATGGCCCTGCCCTGCTCCT- 3′ | 50.1 |
| P2 5′-TCACTTCCTGCTCCGCAATC-3′ | |||
| mMiIFN-α1–13 | 495 | P3 5′- CGGGATCCTGTGACCTGCCTCAG-3′ | 55 |
| P4 5′- CCAAGCTTTCACTTCCTGCTCCGCAAT-3′ |