| Literature DB >> 25889596 |
Li Wang1, Xiaoxing Xu2, Huiping Zhang3, Jihong Qian4, Jianxing Zhu5.
Abstract
The performance of dried blood spots (DBS) polymerase chain reaction (PCR) assays in screening for congenital cytomegalovirus (cCMV) infection varies between different studies. To determine whether the DBS PCR assay has sufficient accuracy to be used as a screening test for cCMV infection, we performed a meta-analysis of 15 studies (n = 26007 neonates) that evaluated the performance of DBS PCR tests in screening for cCMV infection and that met our inclusion criteria. The pooled sensitivity and specificity were 0.844 (95% CI = 0.812-0.872) and 0.999 (95% CI = 0.998-0.999), respectively, and the diagnostic odds ratio was 1362.10 (95%CI = 566.91-3272.60). As sensitivity analysis showed that the results were robust. In conclusion, the performance of DBS PCR assays for testing cCMV was more suitable for retrospective diagnosis than screening.Entities:
Mesh:
Year: 2015 PMID: 25889596 PMCID: PMC4408583 DOI: 10.1186/s12985-015-0281-9
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
The calculation methods of LOD
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| Barbi et al [ | 50 | 25 | 2 | 4 | 2 | 500 |
| Binda et al [ | 40 | 45 | 10 | 8.89 | 4 | 449.9 |
| Boppana et al [ | 8 | 30a | 5 | 1.3 | 1.56 | 1200d |
| Leruez-Ville et al [ | 50 | 50 | 10 | 10 | 40 | 4000 |
| Paradizˇ et al [ | 16 | 100 | 20 | 3.2 | 4.15 | 1296 |
| Scanga et al [ | 50 | 100 | 10 | 5 | 8 | 1600 |
| Soetens et al [ | 50 | 25 | 5c | 10 | 94 | 9400 |
| Vaudry et al [ | 50 | 50b | 5 | 5 | 8 | 1600 |
a. The volume is recommended in the DNA extraction kit (Qiagen) used in the study, may not the true volume in the tests. b. The volume is recommended in the DNA extraction kit (Magazorb, USA) used in the study, may not the true volume in the tests. c. The data was referenced study by Leruez-Ville et al [36]. d. We chose the minimum dilution in the sensitivity titration assays to evaluate the LOD, because the data described in the article seems not reliability.
(Assuming a 100% yield of extraction).
Sensitivity analysis
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| Barbi et al [ | 1350.5 | 532.0-3428.5 |
| Barbi et al [ | 1090.5 | 453.4-2623.0 |
| Binda et al [ | 1203.6 | 502.3-2884.3 |
| Boppana et al [ | 1396.4 | 501.6-3887.2 |
| Boppana et al [ | 1212.7 | 482.7-3046.9 |
| Distéfano et al [ | 1275.9 | 509.2-3197.1 |
| Johansson et al [ | 1566.9 | 651.6-3768.1 |
| Leruez-Ville et al [ | 1287.4 | 508.7-3258.3 |
| Leruez-Ville et al [ | 1243.8 | 495.8-3120.4 |
| Paixão et al [ | 1682.7 | 691.6-4094.1 |
| Paradizˇ et al [ | 1262.6 | 508.9-3132.5 |
| Scanga et al [ | 1432.5 | 576.3-3561.0 |
| Soetens et al [ | 1636.5 | 711.2-3765.3 |
| Vaudry et al [ | 1555.8 | 642.7-3765.9 |
| Yamamoto et al [ | 1357.9 | 536.4-3437.6 |
| combined | 1262.6 | 508.9-3132.5 |
The results showed that the diagnostic odds ratio (DOR) results did not vary significantly when the reference changed.
Figure 1Flow chart showing the process of study selection. 14 articles were included in this meta-analysis.
Characteristics of the included studies
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| Barbi et al [ | 1998 | Italy | Prospective | 205 | Universal screening | 3 disks (3mm) | UN | UN | Heat shock | Nested-PCR | UL55 | Viral isolation from saliva |
| Barbi et al [ | 2006 | Italy | Retrospective | 874 | Suspected of cCMV infection | 3 disks (3mm) | UN | UN | Heat shock | Real-time PCR | gB | Viral isolation from urine or saliva |
| Binda et al [ | 2004 | Italy | Retrospective | 195 | Suspected of cCMV infection | 3 disks (3mm) | UN | UN | modified Heat shock | Nested-PCR | gp58 | Viral isolation from urine,saliva or blood |
| Boppana et al [ | 2010 | America | Prospective | 11407 | Universal screening | 2 disks (3mm) | room temperature | 14.6±9.6days | Qiagen M48 robotic system | Single-primer Real-time PCR | gB | The DEAFF assay on the follow-up saliva/urine sample |
| Boppana et al [ | 2010 | America | Prospective | 9018 | Universal screening | 2 disks (3mm) | room temperature | 14.6±9.6days | Qiagen M48 robotic system | Two-primer Real-time PCR | gB & IE2 | The DEAFF assay on the follow-up saliva/urine sample |
| Distéfano et al [ | 2008 | Argentina | Retrospective | 145 | Compatible symptoms | UN | UN | UN | Heat shock | Nested-PCR | gB | Viral isolation from urine |
| Johansson et al [ | 1997 | Sweden | Retrospective | 31 | infants confirmed with/without cCMV and infants whose samples were stored close to the infetive ones | 25mm2 | 4°C | 12-18 years | Phenol-chloroform | PCR+hybridization test | OP1, OP2, IE1 | Viral isolation from urine |
| Leruez-Ville et al [ | 2009 | France | Retrospective | 214 | Compatible symptoms, Maternal PI | UN | UN | UN | QiAamp DNA Blood Mini kit (Qiagen) | Real-time PCR | UL123exon 4 | Urine culture/PCR |
| Leruez-Ville et al [ | 2011 | France | Prospective | 271 | Compatible symptoms, Maternal PI | whole spot (10mm) | standard conditions | After metabolic screening | QiAamp DNA Blood Mini kit (Qiagen) | Real-time PCR | UL123exon 4 | Urine sample PCR |
| Paixão et al [ | 2009 | Portuguese | Retrospective | 308 | Neonates confirmed with/without cCMV infection | UN | UN | UN | Heat shock | Nested-PCR | gp58 | Urine shell-viral culture |
| Paradizˇ et al [ | 2012 | Slovenia | Prospective | 2841 | Universal screening | 8 discs (2mm) | room temperature | 7 days | QiAamp DNA Blood Micro kit (Qiagen) | Real-time PCR | UN | Urine sample PCR |
| Scanga et al [ | 2006 | America | Retrospective | 19 | infants confirmed with/without cCMV and infants whose samples were stored close to the infetive ones | whole spot (10mm) | room temperature | 2-20 months | QiAamp DNA Blood Micro kit (Qiagen) | Real-time PCR | POL | Urine culture |
| Soetens et al [ | 2008 | Brussels | Retrospective | 67 | Universal screening | whole spot (10mm) | room temperature | 72.9±31 months (0.5-130 months) | Phenol chloroform | Conventional PCR + nested-PCR | US8 & gH | Urine culture |
| Vaudry et al [ | 2010 | Canada | Prospective | 95 | infants with VLBWs or SGA | UN | UN | about one month | MagaZorb DNA extraction Kit (Cortex Biochem) | CMV LC-real time PCR (Roche Diagnostic) | gB1, gB2 | Viral isolation from throat swabs |
| Yamamoto et al [ | 2001 | Brazil | Prospective | 332 | Universal screening | 3 disks (6mm) | -20°C | UN | Heat shock | Nested-PCR | MIE & gB/gB1 & IE | Urine sample viral culture and/or PCR |
We extracted characteristics of the 15 studies, regarding to sample group information, DBS sample collection, DNA extraction and PCR methods. In Boppana et al. [2] study, they enrolled two groups of subjects and used different methods, therefore this article was deemed to be two independent studies. In Distéfano et al [24] study, 15 of 145 cases were identified as perinatal CMV infection, they were not included in this meta-analysis.
Summary of the assessment of the included studies using QUADAS-2
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| Barbi et al [ | H | L | L | L | L | L | L |
| Barbi et al [ | H | ? | L | L | ? | ? | L |
| Binda et al [ | H | L | ? | L | L | H | L |
| Boppana et al [ | L | L | L | L | L | L | L |
| Boppana et al [ | L | L | L | L | L | L | L |
| Distéfano et al [ | H | L | L | L | L | L | L |
| Johansson et al [ | H | H | L | L | L | L | L |
| Leruez-Ville et al [ | H | ? | L | L | L | L | L |
| Leruez-Ville et al [ | H | L | L | L | L | L | L |
| Paixão et al [ | H | H | L | L | L | L | L |
| Paradizˇ et al [ | L | H | L | L | L | L | L |
| Scanga et al [ | H | H | L | L | L | L | L |
| Soetens et al [ | L | H | L | L | L | L | L |
| Vaudry et al [ | L | L | L | L | L | L | L |
| Yamamoto et al [ | L | L | L | L | L | L | L |
H = High risks; L= Low risks; ? = Unclear risks.
Figure 2Summary of diagnostic performance estimates using random effect model. a. Pooled sensitivity of DBS PCR assays; The pooled sensitivity is 0.84. b. Pooled specificity of DBS PCR assays; The pooled specificity is 1.00. c. DOR for DBS PCR assays; The DOR is 1362.09. d SROC curve for cCMV diagnosis by DBS PCR assays. The AUC is 0.9953.
Performance of subgroups of DBS PCR assays for screening cCMV
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| Prospective | 7 | 0.0 | 0.45 | 0.623 (0.548 - 0.693) | 0.999 (0.999 - 1.000) | 280.72 (60.026 - 1312.8) | 0.374 (0.182 - 0.768) | 1573.9 (699.17 - 3543.00) |
| Retrospective | 8 | 64.0 | 0.01 | 0.945 (0.918 - 0.965) | 0.983 (0.974 - 0.989) | 43.831 (19.745 - 97.298) | 0.043 (0.007 - 0.280) | 1085.71 (229.94 - 5126.46) |
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| High group | 4 | 27.5 | 0.25 | 0.853 (0.773 - 0.914) | 0.983 (0.960 - 0.994) | 34.910 (16.013 - 76.015) | 0.118 (0.009 - 1.596) | 302.47 (44.653 - 2048.9) |
| Low group | 5 | 19.4 | 0.29 | 0.612 (0.534 - 0.658) | 1.000 (0.999 - 1.000) | 554.64 (91.139 - 3375.4) | 0.378 (0.166 - 0.862) | 2428.5 (795.47 - 7413.9) |
| Others | 6 | 61.1 | 0.0249 | 0.970 (0.945 - 0.986) | 0.985 (0.978 - 0.990) | 53.316 (21.532 - 132.013) | 0.053 (0.011- 0.260) | 1438.9 (300.50 - 6890.40) |
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| Large | 5 | 44.3 | 0.13 | 0.861 (0.792 - 0.914) | 0.999 (0.997 - 1.000) | 103.91 (18.832 - 573.350) | 0.116 (0.038 - 0.729) | 1041.8 (151.62 - 7159.1) |
| Small | 5 | 41.0 | 0.15 | 0.632 (0.557 - 0.702) | 1.000 (0.999 - 1.000) | 260.02 (40.310 - 1677.3) | 0.295 (0.122 - 0.711) | 1656.0 (421.89 - 6499.8) |
| Others | 5 | 64 | 0.01 | 0.945 (0.918 - 0.965) | 0.983 (0.974 - 0.989) | 43.831 (19.745 - 97.298) | 0.043 (0.007 - 0.280) | 1085.71 (229.94 - 5126.46) |
a. Diagnostic performance of DBS PCR assays in study design subgroups. The sensitivity in retrospective studies was higher than that in prospective studies, 94.5% and 62.3% respectively. I (64.0%) in subgroup of retrospective studies indicated that there was moderate heterogeneity. b. Diagnostic performance of DBS PCR assays in LOD subgroups. The test performance in low-LOD group was better than that in another two groups. The DOR were 2428.50 and 302.47 respectively. But the sensitivity in low-LOD subgroup (61.2%) was lower than that in high-LOD group (85.3%). c. Diagnostic performance of DBS PCR assays in area of DBS subgroups. The sensitivity of test in large area subgroup was better than that in small area subgroup, 86.1% and 63.2% respectively.
Meta-regression to determine potential sources of heterogeneity
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| LOD | 0.33 | 0.5304 | 1.39 | 0.45 - 4.34 |
| Area | -0.14 | 0.7802 | 0.87 | 0.28 - 2.65 |
| PCR (real-time PCR vs.nested-PCR vs. others) | -1.68 | 0.0082 | 0.19 | 0.06 - 0.58 |
Three factors were probably the source of heterogeneity, and analyzed by meta regression. The LOD and area of DBS were defined as above subgroup analysis. The different PCR methods were defined as real-time PCR, nested-PCR and others (including CMV LC-PCR, conventional PCR combined with nested-PCR, and PCR combined with a hybridization test. The meta regression showed that PCR methods was the factor that influenced the heterogeneity (P = 0.0082).