| Literature DB >> 25885182 |
Lihui Zhu1, Jinwei Dao2, Xiaoli Du3, Hao Li4, Ke Lu5, Jinming Liu6, Guofeng Cheng7.
Abstract
BACKGROUND: Dioecious flatworms of the genus Schistosoma causes schistosomiasis, which is a major public health problem in developing countries. Acquiring detailed knowledge of schistosome-host interactions may aid in the development of novel strategies for schistosomiasis control. MicroRNAs (miRNAs) are involved in processes such as development, cell proliferation, metabolism, and signal transduction. Circulating miRNAs not only serve as a novel class of biomarkers of many diseases but also regulate target gene expression in recipient cells, which are similar to hormones.Entities:
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Year: 2015 PMID: 25885182 PMCID: PMC4391475 DOI: 10.1186/s13071-015-0806-5
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Primers used for qRT-PCR analysis of miRNA expression
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| let-7b-3p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGGGAAG | |
| miR-1194 | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAGGATC | |
| miR-134-5p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCCCCTC | |
| miR-1981-3p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGTCAAA | |
| miR-210-5p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCAGTGT | |
| miR-92a-2-5p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGTAATG | |
| miR-542-3p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTTTCGT | |
| miR-706 | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTTTTTT | |
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| let-7b-3p | F: ATCGTACGTGGGCTATACAAC | 61.5 |
| miR-1194 | F: ATCGTACGTGGGGAATGAGTA | 57 |
| miR-134-5p | F: ATCGTACGTGGGTGTGACTGG | 61.5 |
| miR-1981-3p | F: ATCGTACGTGGGCATCTAACC | 58 |
| miR-210-5p | F: ATCGTACGTGGGAGCCACTGC | 61.5 |
| miR-92a-2-5p | F: ATCGTACGTGGGAGGTGGGGA | 62 |
| miR-542-3p | F:ATCGTACGTGGGTGTGACAGA | 57.5 |
| miR-706 | F:ATCGTACGTGGGAGAGAAACC | 57.5 |
| Common reverse primer | R: GCAGGGTCCGAGGTATTC | |
| GAPDH | F: CATGGCCTTCCGTGTTCCTA | 62 |
| GAPDH | R: CCTGCTTCACCACCTTCTTGAT |
F: forward, R: reverse.
Primers for qRT-PCR analysis of miRNA target expression
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| Bnip3 | NM_009760.4 | F: GCAATGGCAATGGGAGCA | 146 |
| R: TGGTGTCTGGGAGCGAGGT | |||
| Creb1 | NM_001037726.1 | F: AGCAGACAACCAGCAGAG | 102 |
| R: GATACCTGGGCTAATGTGG | |||
| Caspase-3 | NM_009810.3 | F: CTGACTGGAAAGCCGAAAC | 204 |
| R: GGACTGGATGAACCACGAC |
F: forward, R: reverse, Bnip3: BcL2/adenovirus E1B interacting protein 3, Creb1: cAMP responsive element binding protein 1.
Figure 1Workflow of the analyses of altered levels of miRNAs in the plasma of schistosome-infected mice.
Figure 2Altered levels of miRNAs identified in two biological replicates (data represent the average difference in levels between the two biological replicates).
Figure 3Quantitative RT-PCR analyses of the levels of selected miRNAs in infected mice. Data illustrate representative experiments and show the mean and standard error derived from triplicate biological replicates. Pools of plasma from at least four S. japonicum infected mice and four uninfected controls were used in each biological experiment. *means P ≤ 0.05 and **means P ≤ 0.01 (student’s t test analysis).
Figure 4Putative functional annotation of altered levels of miRNAs (down-regulated miRNAs for a and up-regulated miRNAs for b). A full list of the biological functions of the differentially altered levels of miRNAs in 25 dpi mice compared with those detected in uninfected mice is shown in Additional file 1: Table S1.
Figure 5Gene ontology categories and pathway analyses of the predicted target genes. a. Categorization of miRNA-target genes was performed according to the biological process; b. Pathway analysis of the predicted target genes. The results of KEGG analysis of these altered miRNAs in 25 dpi S. japonicum infected mice compared with the uninfected mice are shown in Additional file 1: Table S2.
Figure 6Analysis of the levels of selected miRNAs and their target genes using qRT-PCR. a. qRT-PCR analysis of the plasma levels of selected miRNAs and their target genes; b. qRT-PCR analysis of the levels of selected miRNAs and their target genes in the livers of S. japonicum infected mice. Data illustrate representative experiments and show the mean and standard error derived from triplicate biological replicates. Pools of plasma and livers from at least four S. japonicum infected mice and four uninfected controls were used in each biological experiment. Creb1: cAMP responsive element binding protein 1. *means P ≤ 0.05 and **means P ≤ 0.01. (student’s t test analysis).