Literature DB >> 25882383

Integrator: surprisingly diverse functions in gene expression.

David Baillat1, Eric J Wagner2.   

Abstract

The discovery of the metazoan-specific Integrator (INT) complex represented a breakthrough in our understanding of noncoding U-rich small nuclear RNA (UsnRNA) maturation and has triggered a reevaluation of their biosynthesis mechanism. In the decade since, significant progress has been made in understanding the details of its recruitment, specificity, and assembly. While some discrepancies remain on how it interacts with the C-terminal domain (CTD) of the RNA polymerase II (RNAPII) and the details of its recruitment to UsnRNA genes, preliminary models have emerged. Recent provocative studies now implicate INT in the regulation of protein-coding gene transcription initiation and RNAPII pause-release, thereby broadening the scope of INT functions in gene expression regulation. We discuss the implications of these findings while putting them into the context of what is understood about INT function at UsnRNA genes.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Integrator; RNAPII CTD; UsnRNA processing; pause-release; transcriptional activation

Mesh:

Substances:

Year:  2015        PMID: 25882383      PMCID: PMC4408249          DOI: 10.1016/j.tibs.2015.03.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  61 in total

Review 1.  The RNA polymerase II carboxy-terminal domain (CTD) code.

Authors:  Dirk Eick; Matthias Geyer
Journal:  Chem Rev       Date:  2013-08-16       Impact factor: 60.622

Review 2.  The multitalented Mediator complex.

Authors:  Jonas O P Carlsten; Xuefeng Zhu; Claes M Gustafsson
Journal:  Trends Biochem Sci       Date:  2013-09-25       Impact factor: 13.807

3.  Rtr1 is a dual specificity phosphatase that dephosphorylates Tyr1 and Ser5 on the RNA polymerase II CTD.

Authors:  Peter L Hsu; Fan Yang; Whitney Smith-Kinnaman; Wen Yang; Jae-Eun Song; Amber L Mosley; Gabriele Varani
Journal:  J Mol Biol       Date:  2014-06-18       Impact factor: 5.469

4.  A core hSSB1-INTS complex participates in the DNA damage response.

Authors:  Feng Zhang; Teng Ma; Xiaochun Yu
Journal:  J Cell Sci       Date:  2013-08-28       Impact factor: 5.285

5.  Integrator regulates transcriptional initiation and pause release following activation.

Authors:  Alessandro Gardini; David Baillat; Matteo Cesaroni; Deqing Hu; Jill M Marinis; Eric J Wagner; Mitchell A Lazar; Ali Shilatifard; Ramin Shiekhattar
Journal:  Mol Cell       Date:  2014-09-04       Impact factor: 17.970

Review 6.  Non-mRNA 3' end formation: how the other half lives.

Authors:  Natoya Peart; Anupama Sataluri; David Baillat; Eric J Wagner
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-06-10       Impact factor: 9.957

7.  The Integrator complex controls the termination of transcription at diverse classes of gene targets.

Authors:  Jeffrey R Skaar; Andrea L Ferris; Xiaolin Wu; Anita Saraf; Kum Kum Khanna; Laurence Florens; Michael P Washburn; Stephen H Hughes; Michele Pagano
Journal:  Cell Res       Date:  2015-02-13       Impact factor: 25.617

8.  Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes.

Authors:  Bernd Stadelmayer; Gaël Micas; Adrien Gamot; Pascal Martin; Nathalie Malirat; Slavik Koval; Raoul Raffel; Bijan Sobhian; Dany Severac; Stéphanie Rialle; Hugues Parrinello; Olivier Cuvier; Monsef Benkirane
Journal:  Nat Commun       Date:  2014-11-20       Impact factor: 14.919

9.  Nuclear import of RNA polymerase II is coupled with nucleocytoplasmic shuttling of the RNA polymerase II-associated protein 2.

Authors:  Diane Forget; Andrée-Anne Lacombe; Philippe Cloutier; Mathieu Lavallée-Adam; Mathieu Blanchette; Benoit Coulombe
Journal:  Nucleic Acids Res       Date:  2013-05-30       Impact factor: 16.971

10.  Vertebrate Ssu72 regulates and coordinates 3'-end formation of RNAs transcribed by RNA polymerase II.

Authors:  Shotaro Wani; Masamichi Yuda; Yosuke Fujiwara; Masaya Yamamoto; Fumio Harada; Yoshiaki Ohkuma; Yutaka Hirose
Journal:  PLoS One       Date:  2014-08-28       Impact factor: 3.240

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  46 in total

1.  Biallelic sequence variants in INTS1 in patients with developmental delays, cataracts, and craniofacial anomalies.

Authors:  Max Krall; Stephanie Htun; Rhonda E Schnur; Alice S Brooks; Laura Baker; Alejandra de Alba Campomanes; Ryan E Lamont; Karen W Gripp; Dina Schneidman-Duhovny; A Micheil Innes; Grazia M S Mancini; Anne M Slavotinek
Journal:  Eur J Hum Genet       Date:  2019-01-08       Impact factor: 4.246

2.  Hyperosmotic stress alters the RNA polymerase II interactome and induces readthrough transcription despite widespread transcriptional repression.

Authors:  Nicolle A Rosa-Mercado; Joshua T Zimmer; Maria Apostolidi; Jesse Rinehart; Matthew D Simon; Joan A Steitz
Journal:  Mol Cell       Date:  2021-01-04       Impact factor: 17.970

3.  Structure of an active human histone pre-mRNA 3'-end processing machinery.

Authors:  Yadong Sun; Yixiao Zhang; Wei Shen Aik; Xiao-Cui Yang; William F Marzluff; Thomas Walz; Zbigniew Dominski; Liang Tong
Journal:  Science       Date:  2020-02-07       Impact factor: 47.728

Review 4.  The Integrator Complex in Transcription and Development.

Authors:  María Saraí Mendoza-Figueroa; Deirdre C Tatomer; Jeremy E Wilusz
Journal:  Trends Biochem Sci       Date:  2020-08-13       Impact factor: 13.807

5.  Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress.

Authors:  Wei Shi; Therese Vu; Didier Boucher; Anna Biernacka; Jules Nde; Raj K Pandita; Jasmin Straube; Glen M Boyle; Fares Al-Ejeh; Purba Nag; Jessie Jeffery; Janelle L Harris; Amanda L Bain; Marta Grzelak; Magdalena Skrzypczak; Abhishek Mitra; Norbert Dojer; Nicola Crosetto; Nicole Cloonan; Olivier J Becherel; John Finnie; Jeffrey R Skaar; Carl R Walkley; Tej K Pandita; Maga Rowicka; Krzysztof Ginalski; Steven W Lane; Kum Kum Khanna
Journal:  Blood       Date:  2017-03-07       Impact factor: 22.113

6.  The Integrator Complex Attenuates Promoter-Proximal Transcription at Protein-Coding Genes.

Authors:  Nathan D Elrod; Telmo Henriques; Kai-Lieh Huang; Deirdre C Tatomer; Jeremy E Wilusz; Eric J Wagner; Karen Adelman
Journal:  Mol Cell       Date:  2019-12-05       Impact factor: 17.970

7.  Genome-Wide Discovery of DEAD-Box RNA Helicase Targets Reveals RNA Structural Remodeling in Transcription Termination.

Authors:  Yu-Hsuan Lai; Krishna Choudhary; Sara C Cloutier; Zheng Xing; Sharon Aviran; Elizabeth J Tran
Journal:  Genetics       Date:  2019-03-22       Impact factor: 4.562

8.  Molecular basis for the interaction between Integrator subunits IntS9 and IntS11 and its functional importance.

Authors:  Yixuan Wu; Todd R Albrecht; David Baillat; Eric J Wagner; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-10       Impact factor: 11.205

9.  Integrator Recruits Protein Phosphatase 2A to Prevent Pause Release and Facilitate Transcription Termination.

Authors:  Kai-Lieh Huang; David Jee; Chad B Stein; Nathan D Elrod; Telmo Henriques; Lauren G Mascibroda; David Baillat; William K Russell; Karen Adelman; Eric J Wagner
Journal:  Mol Cell       Date:  2020-09-22       Impact factor: 17.970

Review 10.  UsnRNP biogenesis: mechanisms and regulation.

Authors:  Oliver J Gruss; Rajyalakshmi Meduri; Maximilian Schilling; Utz Fischer
Journal:  Chromosoma       Date:  2017-08-01       Impact factor: 4.316

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