Literature DB >> 25201415

Integrator regulates transcriptional initiation and pause release following activation.

Alessandro Gardini1,2, David Baillat3, Matteo Cesaroni4, Deqing Hu5, Jill M Marinis6, Eric J Wagner3, Mitchell A Lazar6, Ali Shilatifard5, Ramin Shiekhattar1,2.   

Abstract

In unicellular organisms, initiation is the rate-limiting step in transcription; in metazoan organisms, the transition from initiation to productive elongation is also important. Here, we show that the RNA polymerase II (RNAPII)-associated multiprotein complex, Integrator, plays a critical role in both initiation and the release of paused RNAPII at immediate early genes (IEGs) following transcriptional activation by epidermal growth factor (EGF) in human cells. Integrator is recruited to the IEGs in a signal-dependent manner and is required to engage and recruit the super elongation complex (SEC) to EGF-responsive genes to allow release of paused RNAPII and productive transcription elongation.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25201415      PMCID: PMC4292851          DOI: 10.1016/j.molcel.2014.08.004

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  44 in total

1.  NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II.

Authors:  M Barboric; R M Nissen; S Kanazawa; N Jabrane-Ferrat; B M Peterlin
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

Review 2.  Recent highlights of RNA-polymerase-II-mediated transcription.

Authors:  Robert J Sims; Subhrangsu S Mandal; Danny Reinberg
Journal:  Curr Opin Cell Biol       Date:  2004-06       Impact factor: 8.382

3.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

Review 4.  Transcriptional regulation and the role of diverse coactivators in animal cells.

Authors:  Robert G Roeder
Journal:  FEBS Lett       Date:  2005-02-07       Impact factor: 4.124

5.  The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.

Authors:  Moon Kyoo Jang; Kazuki Mochizuki; Meisheng Zhou; Ho-Sang Jeong; John N Brady; Keiko Ozato
Journal:  Mol Cell       Date:  2005-08-19       Impact factor: 17.970

6.  Elongation and premature termination of transcripts initiated from c-fos and c-myc promoters show dissimilar patterns.

Authors:  A Plet; D Eick; J M Blanchard
Journal:  Oncogene       Date:  1995-01-19       Impact factor: 9.867

7.  NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation.

Authors:  Y Yamaguchi; T Takagi; T Wada; K Yano; A Furuya; S Sugimoto; J Hasegawa; H Handa
Journal:  Cell       Date:  1999-04-02       Impact factor: 41.582

8.  DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs.

Authors:  T Wada; T Takagi; Y Yamaguchi; A Ferdous; T Imai; S Hirose; S Sugimoto; K Yano; G A Hartzog; F Winston; S Buratowski; H Handa
Journal:  Genes Dev       Date:  1998-02-01       Impact factor: 11.361

9.  Myc recruits P-TEFb to mediate the final step in the transcriptional activation of the cad promoter.

Authors:  Scott R Eberhardy; Peggy J Farnham
Journal:  J Biol Chem       Date:  2002-08-09       Impact factor: 5.157

10.  NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila.

Authors:  Chanhyo Lee; Xiaoyong Li; Aaron Hechmer; Michael Eisen; Mark D Biggin; Bryan J Venters; Cizhong Jiang; Jian Li; B Franklin Pugh; David S Gilmour
Journal:  Mol Cell Biol       Date:  2008-03-10       Impact factor: 4.272

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  77 in total

1.  PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II.

Authors:  Fei Xavier Chen; Ashley R Woodfin; Alessandro Gardini; Ryan A Rickels; Stacy A Marshall; Edwin R Smith; Ramin Shiekhattar; Ali Shilatifard
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

2.  DSP1 and DSP4 Act Synergistically in Small Nuclear RNA 3' End Maturation and Pollen Growth.

Authors:  Xuepiao Pu; Chunmei Meng; Weili Wang; Siyu Yang; Yuan Chen; Qingjun Xie; Bin Yu; Yunfeng Liu
Journal:  Plant Physiol       Date:  2019-06-21       Impact factor: 8.340

3.  Chromatin proteomic profiling reveals novel proteins associated with histone-marked genomic regions.

Authors:  Xiong Ji; Daniel B Dadon; Brian J Abraham; Tong Ihn Lee; Rudolf Jaenisch; James E Bradner; Richard A Young
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

4.  Hyperosmotic stress alters the RNA polymerase II interactome and induces readthrough transcription despite widespread transcriptional repression.

Authors:  Nicolle A Rosa-Mercado; Joshua T Zimmer; Maria Apostolidi; Jesse Rinehart; Matthew D Simon; Joan A Steitz
Journal:  Mol Cell       Date:  2021-01-04       Impact factor: 17.970

5.  The Tumor Suppressor ARID1A Controls Global Transcription via Pausing of RNA Polymerase II.

Authors:  Marco Trizzino; Elisa Barbieri; Ana Petracovici; Shuai Wu; Sarah A Welsh; Tori A Owens; Silvia Licciulli; Rugang Zhang; Alessandro Gardini
Journal:  Cell Rep       Date:  2018-06-26       Impact factor: 9.423

Review 6.  The Integrator Complex in Transcription and Development.

Authors:  María Saraí Mendoza-Figueroa; Deirdre C Tatomer; Jeremy E Wilusz
Journal:  Trends Biochem Sci       Date:  2020-08-13       Impact factor: 13.807

7.  Alternative splicing of DSP1 enhances snRNA accumulation by promoting transcription termination and recycle of the processing complex.

Authors:  Weili Wang; Xuepiao Pu; Siyu Yang; Yujie Feng; Chan Lin; Mu Li; Xi Li; Huali Li; Chunmei Meng; Qingjun Xie; Bin Yu; Yunfeng Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

8.  PAF1 regulation of promoter-proximal pause release via enhancer activation.

Authors:  Fei Xavier Chen; Peng Xie; Clayton K Collings; Kaixiang Cao; Yuki Aoi; Stacy A Marshall; Emily J Rendleman; Michal Ugarenko; Patrick A Ozark; Anda Zhang; Ramin Shiekhattar; Edwin R Smith; Michael Q Zhang; Ali Shilatifard
Journal:  Science       Date:  2017-08-31       Impact factor: 47.728

9.  Global Run-On Sequencing (GRO-Seq).

Authors:  Alessandro Gardini
Journal:  Methods Mol Biol       Date:  2017

10.  O-GlcNAcase Is an RNA Polymerase II Elongation Factor Coupled to Pausing Factors SPT5 and TIF1β.

Authors:  Melissa Resto; Bong-Hyun Kim; Alfonso G Fernandez; Brian J Abraham; Keji Zhao; Brian A Lewis
Journal:  J Biol Chem       Date:  2016-09-06       Impact factor: 5.157

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