Literature DB >> 25881211

Methyl-specific isotopic labeling: a molecular tool box for solution NMR studies of large proteins.

Rime Kerfah1, Michael J Plevin2, Remy Sounier3, Pierre Gans1, Jerome Boisbouvier4.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy is a uniquely powerful tool for studying the structure, dynamics and interactions of biomolecules at atomic resolution. In the past 15 years, the development of new isotopic labeling strategies has opened the possibility of exploiting NMR spectroscopy in the study of supra-molecular complexes with molecular weights of up to 1MDa. At the core of these isotopic labeling developments is the specific introduction of [(1)H,(13)C]-labeled methyl probes into perdeuterated proteins. Here, we describe the evolution of these approaches and discuss their impact on structural and biological studies. The relevant protocols are succinctly reviewed for single and combinatorial isotopic-labeling of methyl-containing residues, and examples of applications on challenging biological systems, including high molecular weight and membrane proteins, are presented.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25881211     DOI: 10.1016/j.sbi.2015.03.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  49 in total

1.  Highly efficient residue-selective labeling with isotope-labeled Ile, Leu, and Val using a new auxotrophic E. coli strain.

Authors:  Yohei Miyanoiri; Yojiro Ishida; Mitsuhiro Takeda; Tsutomu Terauchi; Masayori Inouye; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-06-06       Impact factor: 2.835

2.  Reversible inhibition of the ClpP protease via an N-terminal conformational switch.

Authors:  Siavash Vahidi; Zev A Ripstein; Massimiliano Bonomi; Tairan Yuwen; Mark F Mabanglo; Jordan B Juravsky; Kamran Rizzolo; Algirdas Velyvis; Walid A Houry; Michele Vendruscolo; John L Rubinstein; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

3.  Advanced isotopic labeling for the NMR investigation of challenging proteins and nucleic acids.

Authors:  Jerome Boisbouvier; Lewis E Kay
Journal:  J Biomol NMR       Date:  2018-07       Impact factor: 2.835

4.  Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids.

Authors:  Andrew Proudfoot; Andreas O Frank; Fiorella Ruggiu; Mulugeta Mamo; Andreas Lingel
Journal:  J Biomol NMR       Date:  2016-04-29       Impact factor: 2.835

5.  NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.

Authors:  D M Lesovoy; K S Mineev; P E Bragin; O V Bocharova; E V Bocharov; A S Arseniev
Journal:  J Biomol NMR       Date:  2017-10-23       Impact factor: 2.835

6.  P(III)/P(V)-Catalyzed Methylamination of Arylboronic Acids and Esters: Reductive C-N Coupling with Nitromethane as a Methylamine Surrogate.

Authors:  Gen Li; Ziyang Qin; Alexander T Radosevich
Journal:  J Am Chem Soc       Date:  2020-09-11       Impact factor: 15.419

7.  Measuring the signs of the methyl 1H chemical shift differences between major and 'invisible' minor protein conformational states using methyl 1H multi-quantum spectroscopy.

Authors:  Anusha B Gopalan; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-03-21       Impact factor: 2.835

8.  Conformational heterogeneity in the Hsp70 chaperone-substrate ensemble identified from analysis of NMR-detected titration data.

Authors:  Ashok Sekhar; Jayashree Nagesh; Rina Rosenzweig; Lewis E Kay
Journal:  Protein Sci       Date:  2017-09-18       Impact factor: 6.725

9.  Deuteration of nonexchangeable protons on proteins affects their thermal stability, side-chain dynamics, and hydrophobicity.

Authors:  Parker J Nichols; Isaac Falconer; Aaron Griffin; Colin Mant; Robert Hodges; Christopher J McKnight; Beat Vögeli; Liliya Vugmeyster
Journal:  Protein Sci       Date:  2020-05-26       Impact factor: 6.725

10.  From Nanodiscs to Isotropic Bicelles: A Procedure for Solution Nuclear Magnetic Resonance Studies of Detergent-Sensitive Integral Membrane Proteins.

Authors:  Aisha Laguerre; Frank Löhr; Erik Henrich; Beate Hoffmann; Norzehan Abdul-Manan; Peter J Connolly; Eduardo Perozo; Jonathan M Moore; Frank Bernhard; Volker Dötsch
Journal:  Structure       Date:  2016-09-15       Impact factor: 5.006

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