Literature DB >> 27618661

From Nanodiscs to Isotropic Bicelles: A Procedure for Solution Nuclear Magnetic Resonance Studies of Detergent-Sensitive Integral Membrane Proteins.

Aisha Laguerre1, Frank Löhr1, Erik Henrich1, Beate Hoffmann1, Norzehan Abdul-Manan2, Peter J Connolly2, Eduardo Perozo3, Jonathan M Moore2, Frank Bernhard1, Volker Dötsch4.   

Abstract

Nanodiscs and isotropic bicelles are promising membrane mimetics in the field of solution nuclear magnetic resonance (NMR) spectroscopy of integral membrane proteins (IMPs). Despite varied challenges to solution NMR studies of IMPs, we attribute the paucity of solution NMR structures in these environments to the inability of diverse IMPs to withstand detergent treatment during standard nanodisc and bicelle preparations. Here, we present a strategy that creates small isotropic bicelles from IMPs co-translationally embedded in large nanodiscs using cell-free expression. Our results demonstrate appreciable gains in NMR spectral quality while preserving lipid-IMP contacts. We validate the approach on the detergent-sensitive LspA, which finally allowed us to perform high-quality triple-resonance NMR experiments for structural studies. Our strategy of producing bicelles from nanodiscs comprehensively avoids detergent during expression and preparation and is suitable for solution NMR spectroscopy of lipid-IMP complexes.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27618661      PMCID: PMC5064851          DOI: 10.1016/j.str.2016.07.017

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  58 in total

1.  Bicelle samples for solid-state NMR of membrane proteins.

Authors:  Anna A De Angelis; Stanley J Opella
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

2.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

3.  Lipid-protein nanodiscs for cell-free production of integral membrane proteins in a soluble and folded state: comparison with detergent micelles, bicelles and liposomes.

Authors:  E N Lyukmanova; Z O Shenkarev; N F Khabibullina; G S Kopeina; M A Shulepko; A S Paramonov; K S Mineev; R V Tikhonov; L N Shingarova; L E Petrovskaya; D A Dolgikh; A S Arseniev; M P Kirpichnikov
Journal:  Biochim Biophys Acta       Date:  2011-10-26

4.  Reconstitution of integral membrane proteins into isotropic bicelles with improved sample stability and expanded lipid composition profile.

Authors:  Emma A Morrison; Katherine A Henzler-Wildman
Journal:  Biochim Biophys Acta       Date:  2011-12-29

5.  Combinatorial triple-selective labeling as a tool to assist membrane protein backbone resonance assignment.

Authors:  Frank Löhr; Sina Reckel; Mikhail Karbyshev; Peter J Connolly; Norzehan Abdul-Manan; Frank Bernhard; Jonathan M Moore; Volker Dötsch
Journal:  J Biomol NMR       Date:  2012-01-18       Impact factor: 2.835

6.  Detergent-free isolation, characterization, and functional reconstitution of a tetrameric K+ channel: the power of native nanodiscs.

Authors:  Jonas M Dörr; Martijn C Koorengevel; Marre Schäfer; Alexander V Prokofyev; Stefan Scheidelaar; Elwin A W van der Cruijsen; Timothy R Dafforn; Marc Baldus; J Antoinette Killian
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

7.  Preparative scale expression of membrane proteins in Escherichia coli-based continuous exchange cell-free systems.

Authors:  Daniel Schwarz; Friederike Junge; Florian Durst; Nadine Frölich; Birgit Schneider; Sina Reckel; Solmaz Sobhanifar; Volker Dötsch; Frank Bernhard
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

8.  Longitudinal-relaxation-enhanced NMR experiments for the study of nucleic acids in solution.

Authors:  Jonathan Farjon; Jérôme Boisbouvier; Paul Schanda; Arthur Pardi; Jean-Pierre Simorre; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2009-06-24       Impact factor: 15.419

9.  Mapping chemical exchange in proteins with MW > 50 kD.

Authors:  Chunyu Wang; Mark Rance; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Resting state of the human proton channel dimer in a lipid bilayer.

Authors:  Qufei Li; Rong Shen; Jeremy S Treger; Sherry S Wanderling; Wieslawa Milewski; Klaudia Siwowska; Francisco Bezanilla; Eduardo Perozo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-06       Impact factor: 11.205

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  7 in total

1.  pH-Dependent Membrane Interactions of the Histidine-Rich Cell-Penetrating Peptide LAH4-L1.

Authors:  Justine Wolf; Christopher Aisenbrey; Nicole Harmouche; Jesus Raya; Philippe Bertani; Natalia Voievoda; Regine Süss; Burkhard Bechinger
Journal:  Biophys J       Date:  2017-07-19       Impact factor: 4.033

2.  From Gene to Function: Cell-Free Electrophysiological and Optical Analysis of Ion Pumps in Nanodiscs.

Authors:  Erik Henrich; Janina Sörmann; Peter Eberhardt; Oliver Peetz; Julija Mezhyrova; Nina Morgner; Klaus Fendler; Volker Dötsch; Josef Wachtveitl; Frank Bernhard; Christian Bamann
Journal:  Biophys J       Date:  2017-04-24       Impact factor: 4.033

Review 3.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

4.  Analyzing native membrane protein assembly in nanodiscs by combined non-covalent mass spectrometry and synthetic biology.

Authors:  Erik Henrich; Oliver Peetz; Christopher Hein; Aisha Laguerre; Beate Hoffmann; Jan Hoffmann; Volker Dötsch; Frank Bernhard; Nina Morgner
Journal:  Elife       Date:  2017-01-09       Impact factor: 8.140

5.  Amino-acid selective isotope labeling enables simultaneous overlapping signal decomposition and information extraction from NMR spectra.

Authors:  Takuma Kasai; Shunsuke Ono; Seizo Koshiba; Masayuki Yamamoto; Toshiyuki Tanaka; Shiro Ikeda; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2020-01-30       Impact factor: 2.835

6.  A comparative study of branched and linear mannitol-based amphiphiles on membrane protein stability.

Authors:  Hazrat Hussain; Tyler Helton; Yang Du; Jonas S Mortensen; Parameswaran Hariharan; Muhammad Ehsan; Bernadette Byrne; Claus J Loland; Brian K Kobilka; Lan Guan; Pil Seok Chae
Journal:  Analyst       Date:  2018-11-19       Impact factor: 5.227

7.  Lipid Internal Dynamics Probed in Nanodiscs.

Authors:  Denis Martinez; Marion Decossas; Julia Kowal; Lukas Frey; Henning Stahlberg; Erick J Dufourc; Roland Riek; Birgit Habenstein; Stefan Bibow; Antoine Loquet
Journal:  Chemphyschem       Date:  2017-06-30       Impact factor: 3.102

  7 in total

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