Literature DB >> 25878836

Crystal structure of poly[bis-(μ2-5-hydroxy-nicotinato-κ(2) N:O (3))zinc].

Wen-Bing Wang1, Shan-Shan Xu1, Hong-Ji Chen1.   

Abstract

The title coordination polymer, n class="Chemical">[Zn(C6H4NO3)2] n , was prepared under hydro-thermal conditions by the reaction of zinc nitrate with 5-hy-droxy-nicotinic acid in the presence of malonic acid. In the structure, the Zn(II) ion is coordinated by two carboxyl-ate O atoms and two pyridine N atoms of four 5-hy-droxy-nicotinate ligands in a distorted tetra-hedral coordin-ation environment. The μ2-bridging mode of each anion leads to the formation of a three-dimensional framework structure. Inter-molecular hydrogen bonds between the hy-droxy groups of one anion and the non-coordinating carboxyl-ate O atoms of neighbouring anions consolidate the crystal packing.

Entities:  

Keywords:  5-hy­droxy­nicotinate ligand; crystal structure; hydrogen bonding; zinc coordination polymer

Year:  2015        PMID: 25878836      PMCID: PMC4384582          DOI: 10.1107/S2056989015000249

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For transition metal complexes with 5-hy­droxy­nicotinate ligands, see: Jiang & Feng (2008 ▸); Zhang et al. (2011 ▸); Yang et al. (2010 ▸). For corresponding rare earth n class="Chemical">metal complexes, see: Zhang et al. (2012 ▸); Mi et al. (2012 ▸); Xu et al. (2013 ▸).

Experimental

Crystal data

[Zn(C6H4NO3)2] M = 341.57 Monoclinic, a = 9.4299 (6) Å b = 10.5453 (7) Å c = 12.6914 (8) Å β = 104.640 (7)° V = 1221.07 (14) Å3 Z = 4 Mo Kα radiation μ = 2.04 mm−1 T = 150 K 0.41 × 0.37 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▸) T min = 0.488, T max = 0.723 7054 measured reflections 2891 independent reflections 2397 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.075 S = 1.07 3345 reflections 192 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.43 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2005 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015000249/wm5106sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015000249/wm5106Isup2.hkl Click here for additional data file. II . DOI: 10.1107/S2056989015000249/wm5106fig1.tif The coordination environment of the ZnII ion in the title compound, showing displacement ellipsoids at the 50% probability level. Click here for additional data file. 6 4 3 2 n . DOI: 10.1107/S2056989015000249/wm5106fig2.tif The packing in the structure of [Zn(C6H4O3N)2]n, showing the n class="Chemical">polymeric character of the title compound. CCDC reference: 1042412 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Zn(C6H4NO3)2]Z = 4
Mr = 341.57F(000) = 688
Monoclinic, P21/nDx = 1.858 Mg m3
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 9.4299 (6) Åθ = 3.0–29.1°
b = 10.5453 (7) ŵ = 2.04 mm1
c = 12.6914 (8) ÅT = 150 K
β = 104.640 (7)°Block, yellow
V = 1221.07 (14) Å30.41 × 0.37 × 0.17 mm
Bruker APEXII CCD diffractometer2891 independent reflections
Radiation source: fine-focus sealed tube2397 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 29.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −12→12
Tmin = 0.488, Tmax = 0.723k = −14→12
7054 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.075H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0271P)2 + 0.5488P] where P = (Fo2 + 2Fc2)/3
3345 reflections(Δ/σ)max = 0.001
192 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8597 (2)0.3757 (2)0.30816 (18)0.0111 (5)
C20.4890 (2)0.1376 (2)−0.09332 (18)0.0104 (5)
C30.6200 (2)0.0759 (2)−0.08906 (19)0.0118 (5)
H30.63250.0305−0.14890.014*
C40.7328 (2)0.0828 (2)0.00604 (19)0.0114 (5)
C50.7092 (2)0.1514 (2)0.09361 (19)0.0114 (5)
H50.78280.15400.15810.014*
C60.4744 (2)0.2077 (2)−0.00397 (19)0.0123 (5)
H60.38750.2512−0.00780.015*
C70.3884 (2)0.5320 (2)0.19736 (19)0.0135 (5)
C80.2504 (2)0.1059 (2)0.34892 (19)0.0121 (5)
C90.3220 (3)0.0977 (2)0.45873 (19)0.0122 (5)
H90.28240.05090.50650.015*
C100.4545 (3)0.1615 (2)0.49542 (19)0.0126 (5)
C110.5125 (3)0.2258 (2)0.42054 (19)0.0131 (5)
H110.60290.26560.44500.016*
C120.3118 (3)0.1758 (2)0.27914 (19)0.0117 (5)
H120.26100.18360.20640.014*
N10.5831 (2)0.21429 (19)0.08815 (15)0.0108 (4)
N20.4436 (2)0.2330 (2)0.31413 (15)0.0122 (4)
O10.74133 (17)0.32799 (17)0.32074 (13)0.0154 (4)
O20.87405 (18)0.43130 (18)0.22547 (13)0.0179 (4)
O30.85858 (17)0.02136 (18)0.00882 (14)0.0168 (4)
H3A0.91340.02640.07020.025*
O40.41994 (18)0.44819 (17)0.13440 (13)0.0178 (4)
O50.45953 (19)0.55268 (19)0.29152 (14)0.0238 (5)
O60.53504 (19)0.16272 (18)0.60036 (13)0.0188 (4)
H6A0.48850.12880.63910.028*
Zn10.55375 (3)0.32108 (3)0.21439 (2)0.01009 (9)
U11U22U33U12U13U23
C10.0105 (10)0.0118 (12)0.0110 (11)0.0024 (10)0.0028 (9)−0.0023 (9)
C20.0105 (10)0.0102 (12)0.0101 (11)0.0001 (10)0.0016 (9)0.0015 (9)
C30.0130 (11)0.0122 (13)0.0113 (11)−0.0013 (10)0.0050 (9)−0.0009 (10)
C40.0083 (10)0.0120 (13)0.0139 (12)0.0006 (10)0.0026 (9)0.0016 (10)
C50.0097 (10)0.0129 (13)0.0104 (11)0.0005 (10)0.0006 (9)0.0001 (9)
C60.0089 (11)0.0160 (13)0.0111 (12)0.0011 (10)0.0008 (9)0.0005 (9)
C70.0107 (11)0.0143 (13)0.0158 (13)−0.0011 (10)0.0039 (10)0.0019 (10)
C80.0122 (11)0.0104 (12)0.0132 (12)0.0004 (10)0.0021 (9)−0.0021 (9)
C90.0154 (11)0.0100 (12)0.0122 (11)−0.0003 (10)0.0058 (9)0.0001 (9)
C100.0129 (11)0.0143 (13)0.0097 (11)0.0017 (10)0.0012 (9)−0.0017 (9)
C110.0100 (11)0.0159 (13)0.0128 (12)−0.0013 (10)0.0016 (10)−0.0029 (10)
C120.0123 (11)0.0128 (13)0.0102 (11)0.0026 (10)0.0034 (9)−0.0011 (9)
N10.0097 (9)0.0127 (11)0.0093 (9)0.0001 (8)0.0011 (8)−0.0007 (8)
N20.0121 (9)0.0131 (11)0.0113 (10)−0.0014 (9)0.0028 (8)−0.0009 (8)
O10.0096 (8)0.0246 (10)0.0109 (8)−0.0041 (7)0.0006 (7)0.0016 (7)
O20.0157 (8)0.0280 (11)0.0097 (8)0.0012 (8)0.0025 (7)0.0045 (7)
O30.0092 (8)0.0250 (10)0.0144 (9)0.0079 (8)−0.0002 (7)−0.0027 (8)
O40.0190 (9)0.0203 (10)0.0136 (9)0.0090 (8)0.0029 (7)0.0021 (7)
O50.0191 (9)0.0302 (12)0.0164 (10)0.0070 (8)−0.0060 (8)−0.0029 (8)
O60.0184 (9)0.0295 (12)0.0071 (8)−0.0073 (8)0.0008 (7)−0.0013 (7)
Zn10.00810 (14)0.01335 (17)0.00817 (15)0.00045 (11)0.00084 (10)−0.00090 (11)
C1—O21.239 (3)C8—C121.387 (3)
C1—O11.270 (3)C8—C91.389 (3)
C1—C2i1.516 (3)C8—C7iv1.509 (3)
C2—C31.385 (3)C9—C101.392 (3)
C2—C61.390 (3)C9—H90.9300
C2—C1ii1.516 (3)C10—O61.356 (3)
C3—C41.395 (3)C10—C111.387 (3)
C3—H30.9300C11—N21.345 (3)
C4—O31.344 (3)C11—H110.9300
C4—C51.390 (3)C12—N21.351 (3)
C5—N11.348 (3)C12—H120.9300
C5—H50.9300N1—Zn12.034 (2)
C6—N11.348 (3)N2—Zn12.052 (2)
C6—H60.9300O1—Zn11.9364 (15)
C7—O51.233 (3)O3—H3A0.8200
C7—O41.276 (3)O4—Zn11.9421 (17)
C7—C8iii1.509 (3)O6—H6A0.8200
O2—C1—O1125.5 (2)C10—C9—H9120.9
O2—C1—C2i120.3 (2)O6—C10—C11116.6 (2)
O1—C1—C2i114.1 (2)O6—C10—C9124.5 (2)
C3—C2—C6119.3 (2)C11—C10—C9118.9 (2)
C3—C2—C1ii120.8 (2)N2—C11—C10122.8 (2)
C6—C2—C1ii119.8 (2)N2—C11—H11118.6
C2—C3—C4119.1 (2)C10—C11—H11118.6
C2—C3—H3120.4N2—C12—C8121.7 (2)
C4—C3—H3120.4N2—C12—H12119.2
O3—C4—C5123.2 (2)C8—C12—H12119.2
O3—C4—C3118.2 (2)C5—N1—C6119.1 (2)
C5—C4—C3118.5 (2)C5—N1—Zn1121.74 (15)
N1—C5—C4122.2 (2)C6—N1—Zn1119.12 (16)
N1—C5—H5118.9C11—N2—C12118.4 (2)
C4—C5—H5118.9C11—N2—Zn1116.97 (15)
N1—C6—C2121.7 (2)C12—N2—Zn1124.49 (16)
N1—C6—H6119.2C1—O1—Zn1127.16 (15)
C2—C6—H6119.2C4—O3—H3A109.5
O5—C7—O4125.0 (2)C7—O4—Zn1111.97 (15)
O5—C7—C8iii119.4 (2)C10—O6—H6A109.5
O4—C7—C8iii115.5 (2)O1—Zn1—O4134.17 (8)
C12—C8—C9119.9 (2)O1—Zn1—N1106.71 (7)
C12—C8—C7iv119.2 (2)O4—Zn1—N199.80 (8)
C9—C8—C7iv120.8 (2)O1—Zn1—N295.90 (7)
C8—C9—C10118.2 (2)O4—Zn1—N2105.76 (8)
C8—C9—H9120.9N1—Zn1—N2115.24 (8)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O5v0.821.882.697 (2)175
O6—H6A···O2vi0.821.832.651 (3)174
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O3H3AO5i 0.821.882.697(2)175
O6H6AO2ii 0.821.832.651(3)174

Symmetry codes: (i) ; (ii) .

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