Literature DB >> 22969449

Poly[[diaqua-bis-(μ-oxalato-κ(4)O(1),O(2):O(1'),O(2'))bis-(μ(3)-5-oxidopyridin-1-ium-3-carboxyl-ato-κ(3)O(3):O(3'):O(5))diholmium(III)] dihydrate].

Jun-Long Mi1, Jing Huang, Hong-Ji Chen.   

Abstract

In the title compound, {[Ho(2)(C(6)H(4)NO(3))(2)(C(2)O(4))(2)(H(2)O)(2)]·2H(2)O}(n), the Ho(III) atom is coordinated by three O atoms from three 5-hy-droxy-nicotinate ligands, four O atoms from two oxalate ligands, each lying on an inversion center, and one water mol-ecule in a distorted square-anti-prismatic geometry. The 5-hy-droxy-nicotinate ligand is protonated at the N atom and deprotonated at the hy-droxy group. The Ho(III) atoms are bridged by the carboxyl-ate and phenolate O atoms, forming a three-dimensional framework. N-H⋯O and O-H⋯O hydrogen bonds, as well as π-π inter-actions between the pyridine rings [centroid-centroid distance = 3.794 (2) Å], are observed.

Entities:  

Year:  2012        PMID: 22969449      PMCID: PMC3435576          DOI: 10.1107/S1600536812032916

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of compounds with metal-organic framework structures, see: Allendorf et al. (2009 ▶); Choi et al. (2008 ▶); Dang et al. (2010 ▶); Ishikawa et al. (2005 ▶); Lazare et al. (2010 ▶); Shimomura et al. (2010 ▶); Thallapally et al. (2010 ▶). For related structures, see: Zhang et al. (2012 ▶).

Experimental

Crystal data

[Ho2(C6H4NO3)2(C2O4)2(H2O)2]·2H2O M = 854.16 Triclinic, a = 7.7786 (16) Å b = 8.0562 (17) Å c = 9.505 (2) Å α = 110.912 (3)° β = 96.862 (3)° γ = 95.770 (3)° V = 545.8 (2) Å3 Z = 1 Mo Kα radiation μ = 7.30 mm−1 T = 173 K 0.18 × 0.16 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.354, T max = 0.669 4550 measured reflections 2295 independent reflections 2160 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.016 wR(F 2) = 0.038 S = 1.05 2295 reflections 192 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.57 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812032916/hy2567sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032916/hy2567Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ho2(C6H4NO3)2(C2O4)2(H2O)2]·2H2OZ = 1
Mr = 854.16F(000) = 404
Triclinic, P1Dx = 2.599 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7786 (16) ÅCell parameters from 4550 reflections
b = 8.0562 (17) Åθ = 2.3–27.0°
c = 9.505 (2) ŵ = 7.30 mm1
α = 110.912 (3)°T = 173 K
β = 96.862 (3)°Block, colorless
γ = 95.770 (3)°0.18 × 0.16 × 0.06 mm
V = 545.8 (2) Å3
Bruker APEXII CCD diffractometer2295 independent reflections
Radiation source: fine-focus sealed tube2160 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
φ and ω scansθmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.354, Tmax = 0.669k = −10→10
4550 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.016Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.038H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.016P)2 + 0.6363P] where P = (Fo2 + 2Fc2)/3
2295 reflections(Δ/σ)max = 0.001
192 parametersΔρmax = 0.57 e Å3
5 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6934 (4)1.2898 (4)1.1270 (3)0.0109 (5)
C20.7746 (4)0.4547 (4)0.2648 (3)0.0123 (6)
C30.7041 (4)0.5062 (4)0.3987 (3)0.0117 (6)
H30.59890.43870.40320.014*
C40.7864 (4)0.6576 (4)0.5285 (3)0.0124 (6)
C50.9393 (4)0.7518 (4)0.5123 (3)0.0158 (6)
H50.99990.85430.59620.019*
C60.9258 (4)0.5562 (4)0.2565 (4)0.0162 (6)
H60.97430.52450.16510.019*
C70.9532 (4)0.9560 (4)1.0490 (3)0.0106 (6)
C80.4187 (4)0.9302 (4)0.4887 (3)0.0116 (6)
Ho10.647369 (16)0.971506 (16)0.803507 (14)0.00854 (5)
N11.0014 (3)0.6993 (4)0.3802 (3)0.0168 (5)
O10.7614 (3)1.2593 (3)1.0082 (2)0.0162 (5)
O20.4346 (3)0.8128 (3)0.8643 (2)0.0136 (4)
O30.7231 (3)0.7072 (3)0.6565 (2)0.0150 (4)
O40.7922 (3)0.8943 (3)1.0004 (2)0.0133 (4)
O50.9595 (3)1.0464 (3)0.8342 (2)0.0123 (4)
O60.4182 (3)0.8477 (3)0.5761 (2)0.0161 (4)
O70.7033 (3)1.0868 (3)0.6190 (2)0.0135 (4)
O80.4335 (3)1.1739 (3)0.8101 (3)0.0197 (5)
O90.3549 (5)0.5133 (4)0.1651 (4)0.0462 (8)
H11.102 (3)0.760 (4)0.373 (4)0.011 (8)*
H70.489 (6)1.275 (4)0.822 (6)0.061 (17)*
H80.363 (6)1.155 (7)0.866 (5)0.065 (17)*
H90.331 (8)0.448 (7)0.216 (6)0.08 (2)*
H100.269 (6)0.501 (9)0.096 (5)0.09 (2)*
U11U22U33U12U13U23
C10.0095 (13)0.0105 (13)0.0124 (14)0.0018 (10)0.0013 (10)0.0039 (11)
C20.0128 (14)0.0109 (14)0.0113 (14)0.0000 (11)0.0015 (11)0.0027 (11)
C30.0087 (14)0.0118 (14)0.0147 (14)0.0008 (10)0.0034 (11)0.0046 (11)
C40.0136 (14)0.0110 (14)0.0126 (14)0.0038 (11)0.0029 (11)0.0037 (11)
C50.0135 (15)0.0159 (15)0.0141 (15)−0.0008 (11)0.0017 (11)0.0020 (12)
C60.0149 (15)0.0161 (15)0.0143 (15)−0.0008 (12)0.0039 (11)0.0020 (12)
C70.0123 (14)0.0095 (13)0.0088 (13)0.0042 (11)0.0022 (10)0.0012 (11)
C80.0096 (14)0.0128 (14)0.0115 (14)0.0002 (11)0.0017 (10)0.0038 (11)
Ho10.00804 (7)0.00981 (7)0.00735 (7)−0.00004 (5)−0.00004 (4)0.00353 (5)
N10.0126 (13)0.0181 (13)0.0151 (13)−0.0051 (10)0.0041 (10)0.0022 (11)
O10.0163 (11)0.0151 (11)0.0127 (10)−0.0024 (8)0.0061 (8)−0.0002 (9)
O20.0108 (10)0.0137 (10)0.0141 (10)−0.0019 (8)−0.0005 (8)0.0045 (8)
O30.0173 (11)0.0149 (10)0.0106 (10)0.0019 (8)0.0050 (8)0.0015 (8)
O40.0108 (10)0.0185 (11)0.0109 (10)0.0007 (8)0.0001 (8)0.0069 (8)
O50.0105 (10)0.0159 (10)0.0101 (10)0.0012 (8)0.0004 (8)0.0052 (8)
O60.0170 (11)0.0165 (11)0.0148 (11)−0.0054 (8)−0.0047 (8)0.0103 (9)
O70.0108 (10)0.0189 (11)0.0115 (10)−0.0019 (8)−0.0010 (8)0.0086 (8)
O80.0220 (13)0.0232 (13)0.0201 (12)0.0096 (10)0.0087 (9)0.0122 (10)
O90.056 (2)0.0259 (15)0.055 (2)0.0023 (14)−0.0118 (17)0.0206 (15)
C1—O2i1.259 (4)C8—O61.235 (4)
C1—O11.260 (4)C8—O7v1.269 (3)
C1—C2ii1.507 (4)C8—C8v1.545 (6)
C2—C31.388 (4)Ho1—O22.245 (2)
C2—C61.390 (4)Ho1—O32.271 (2)
C2—C1iii1.507 (4)Ho1—O72.322 (2)
C3—C41.414 (4)Ho1—O42.372 (2)
C3—H30.9500Ho1—O52.399 (2)
C4—O31.311 (4)Ho1—O12.429 (2)
C4—C51.400 (4)Ho1—O82.435 (2)
C5—N11.340 (4)Ho1—O62.455 (2)
C5—H50.9500N1—H10.90 (1)
C6—N11.337 (4)O8—H70.85 (1)
C6—H60.9500O8—H80.85 (1)
C7—O5iv1.237 (3)O9—H90.85 (1)
C7—O41.266 (4)O9—H100.85 (1)
C7—C7iv1.559 (6)
O2i—C1—O1123.0 (3)O4—Ho1—O568.67 (7)
O2i—C1—C2ii119.6 (3)O2—Ho1—O1112.36 (7)
O1—C1—C2ii117.4 (3)O3—Ho1—O1143.48 (8)
C3—C2—C6119.6 (3)O7—Ho1—O191.68 (7)
C3—C2—C1iii122.1 (3)O4—Ho1—O175.80 (7)
C6—C2—C1iii118.3 (3)O5—Ho1—O167.35 (7)
C2—C3—C4121.0 (3)O2—Ho1—O883.88 (8)
C2—C3—H3119.5O3—Ho1—O8142.95 (8)
C4—C3—H3119.5O7—Ho1—O875.53 (8)
O3—C4—C5121.8 (3)O4—Ho1—O8130.78 (7)
O3—C4—C3122.0 (3)O5—Ho1—O8126.55 (8)
C5—C4—C3116.2 (3)O1—Ho1—O871.62 (8)
N1—C5—C4120.9 (3)O2—Ho1—O674.25 (7)
N1—C5—H5119.5O3—Ho1—O674.55 (8)
C4—C5—H5119.5O7—Ho1—O668.06 (7)
N1—C6—C2118.5 (3)O4—Ho1—O6141.48 (7)
N1—C6—H6120.7O5—Ho1—O6132.12 (7)
C2—C6—H6120.7O1—Ho1—O6138.53 (7)
O5iv—C7—O4126.2 (3)O8—Ho1—O668.47 (8)
O5iv—C7—C7iv118.1 (3)C6—N1—C5123.8 (3)
O4—C7—C7iv115.7 (3)C6—N1—H1117 (2)
O6—C8—O7v126.3 (3)C5—N1—H1119 (2)
O6—C8—C8v118.0 (3)C1—O1—Ho1115.09 (18)
O7v—C8—C8v115.6 (3)C1i—O2—Ho1169.7 (2)
O2—Ho1—O388.38 (8)C4—O3—Ho1132.61 (19)
O2—Ho1—O7141.51 (7)C7—O4—Ho1118.19 (18)
O3—Ho1—O788.96 (8)C7iv—O5—Ho1116.85 (18)
O2—Ho1—O475.56 (7)C8—O6—Ho1115.09 (18)
O3—Ho1—O481.26 (8)C8v—O7—Ho1119.68 (18)
O7—Ho1—O4141.63 (7)Ho1—O8—H7108 (4)
O2—Ho1—O5143.17 (7)Ho1—O8—H8106 (4)
O3—Ho1—O578.02 (7)H7—O8—H8126 (5)
O7—Ho1—O573.02 (7)H9—O9—H10111 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1···O7vi0.90 (1)1.83 (1)2.727 (3)171 (3)
O8—H7···O9v0.85 (1)1.95 (1)2.787 (4)171 (5)
O8—H8···O4i0.85 (1)1.96 (1)2.811 (3)177 (6)
O9—H9···O3vii0.85 (1)2.08 (1)2.929 (4)178 (6)
O9—H10···O1v0.85 (1)2.48 (6)3.003 (4)120 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O7i 0.90 (1)1.83 (1)2.727 (3)171 (3)
O8—H7⋯O9ii 0.85 (1)1.95 (1)2.787 (4)171 (5)
O8—H8⋯O4iii 0.85 (1)1.96 (1)2.811 (3)177 (6)
O9—H9⋯O3iv 0.85 (1)2.08 (1)2.929 (4)178 (6)
O9—H10⋯O1ii 0.85 (1)2.48 (6)3.003 (4)120 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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