| Literature DB >> 25878814 |
Muhabbat Honkeldieva1, Samat Talipov1, Rustam Mardanov1, Bakhtiyar Ibragimov1.
Abstract
The title compound, C34H38O8 (systematic name: 5,5'-diisopropyl-2,2',3,3'-tetra-meth-oxy-7,7'-dimethyl-2H,2'H-8,8'-bi-[naphtho-[1,8-bc]furan]-4,4'-diol), has been obtained from a gossypol solution in a mixture of dimethyl sulfate and methanol. The mol-ecule is situated on a twofold rotation axis, so the asymmetric unit contains one half-mol-ecule. In the mol-ecule, the hy-droxy groups are involved in intra-molecular O-H⋯O hydrogen bonds, and the two naphthyl fragments are inclined each to other by 83.8 (1)°. In the crystal, weak C-H⋯O and C-H⋯π inter-actions consolidate the packing, which exhibits channels with an approximate diameter of 6 Å extending along the c-axis direction. These channels are filled with highly disordered solvent mol-ecules, so their estimated scattering contribution was subtracted from the observed diffraction data using the SQUEEZE option in PLATON [Spek, A. L. (2015). Acta Cryst. C71, 9-18].Entities:
Keywords: C—H⋯O hydrogen bonds; C—H⋯π interactions; crystal structure; gossypol; gossypol tetramethyl ether; porous structure
Year: 2015 PMID: 25878814 PMCID: PMC4384568 DOI: 10.1107/S2056989015000171
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound showing the atomic numbering and 50% probability displacement ellipsoids. Unlabeled atoms are related to labeled ones by the symmetry operation (A) −x, y, − z.
Hydrogen-bond geometry (, )
Cg is the centroid of the C1C4/C9/C10 ring.
|
|
| H |
|
|
|---|---|---|---|---|
| O4H4O3 | 0.67(3) | 2.17(4) | 2.586(3) | 122(4) |
| C17H17 | 0.96 | 2.71 | 3.286(3) | 119 |
| C17H17 | 0.96 | 2.77 | 3.551(4) | 139 |
Symmetry codes: (i) ; (ii) .
Figure 2A portion of the crystal packing viewed approximately along the c axis.
Experimental details
| Crystal data | |
| Chemical formula | C34H38O8 |
|
| 574.64 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 293 |
|
| 19.7086(5), 20.3099(7), 8.8443(4) |
|
| 3540.2(2) |
|
| 4 |
| Radiation type | Cu |
| (mm1) | 0.62 |
| Crystal size (mm) | 0.35 0.28 0.26 |
| Data collection | |
| Diffractometer | Oxford Diffraction Xcalibur Ruby |
| Absorption correction | Multi-scan (SCALE3 ABSPACK in |
|
| 0.914, 1.000 |
| No. of measured, independent and observed [ | 12345, 3340, 1826 |
|
| 0.049 |
| (sin /)max (1) | 0.613 |
| Refinement | |
|
| 0.056, 0.162, 0.93 |
| No. of reflections | 3340 |
| No. of parameters | 200 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.24, 0.17 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009 ▸), SHELXS97, SHELXL97 and XP in SHELXTL (Sheldrick, 2008 ▸).
| C34H38O8 | |
| Cu | |
| Orthorhombic, | Cell parameters from 2468 reflections |
| θ = 4.4–70.6° | |
| µ = 0.62 mm−1 | |
| Prism, white | |
| 0.35 × 0.28 × 0.26 mm | |
| Oxford Diffraction Xcalibur Ruby diffractometer | 3340 independent reflections |
| Radiation source: fine-focus sealed tube | 1826 reflections with |
| Graphite monochromator | |
| Detector resolution: 10.2576 pixels mm-1 | θmax = 71.0°, θmin = 4.4° |
| ω scans | |
| Absorption correction: multi-scan (SCALE3 ABSPACK in | |
| 12345 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3340 reflections | Δρmax = 0.24 e Å−3 |
| 200 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00096 (17) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.06600 (7) | 0.08142 (8) | 0.91284 (19) | 0.0592 (5) | |
| O2 | 0.12998 (9) | −0.01420 (8) | 0.8665 (2) | 0.0664 (5) | |
| O3 | 0.29694 (8) | 0.05026 (10) | 0.9636 (2) | 0.0735 (6) | |
| O4 | 0.35682 (9) | 0.13669 (12) | 0.7953 (3) | 0.0731 (6) | |
| C1 | 0.08110 (10) | 0.12972 (12) | 0.8095 (3) | 0.0487 (6) | |
| C2 | 0.03731 (10) | 0.17024 (12) | 0.7358 (3) | 0.0486 (6) | |
| C3 | 0.06794 (11) | 0.21591 (12) | 0.6321 (3) | 0.0521 (6) | |
| C4 | 0.13705 (10) | 0.22063 (12) | 0.6150 (2) | 0.0503 (6) | |
| H4A | 0.1545 | 0.2512 | 0.5472 | 0.060* | |
| C5 | 0.25535 (11) | 0.18076 (12) | 0.6976 (2) | 0.0498 (6) | |
| C6 | 0.28733 (10) | 0.13639 (12) | 0.7919 (3) | 0.0518 (6) | |
| C7 | 0.25350 (11) | 0.08978 (12) | 0.8849 (3) | 0.0532 (6) | |
| C8 | 0.18412 (11) | 0.08864 (11) | 0.8835 (2) | 0.0482 (6) | |
| C9 | 0.15172 (10) | 0.13466 (11) | 0.7923 (2) | 0.0465 (5) | |
| C10 | 0.18240 (10) | 0.18039 (12) | 0.6973 (2) | 0.0463 (6) | |
| C11 | 0.02224 (12) | 0.25791 (16) | 0.5367 (3) | 0.0750 (9) | |
| H11B | 0.0492 | 0.2873 | 0.4766 | 0.113* | |
| H11C | −0.0073 | 0.2830 | 0.6009 | 0.113* | |
| H11A | −0.0044 | 0.2303 | 0.4716 | 0.113* | |
| C12 | 0.12826 (11) | 0.04508 (13) | 0.9467 (3) | 0.0575 (7) | |
| H12 | 0.1337 | 0.0379 | 1.0556 | 0.069* | |
| C13 | 0.29419 (11) | 0.22682 (14) | 0.5945 (3) | 0.0618 (7) | |
| H13 | 0.2602 | 0.2522 | 0.5385 | 0.074* | |
| C14 | 0.33502 (14) | 0.18881 (18) | 0.4773 (3) | 0.0909 (10) | |
| H14A | 0.3052 | 0.1608 | 0.4204 | 0.136* | |
| H14C | 0.3686 | 0.1624 | 0.5273 | 0.136* | |
| H14B | 0.3570 | 0.2192 | 0.4102 | 0.136* | |
| C15 | 0.33765 (15) | 0.27649 (16) | 0.6781 (4) | 0.0922 (11) | |
| H15B | 0.3096 | 0.3020 | 0.7448 | 0.138* | |
| H15A | 0.3592 | 0.3052 | 0.6065 | 0.138* | |
| H15C | 0.3716 | 0.2538 | 0.7357 | 0.138* | |
| C16 | 0.26946 (16) | 0.00777 (18) | 1.0766 (4) | 0.1007 (12) | |
| H16C | 0.3057 | −0.0154 | 1.1260 | 0.151* | |
| H16A | 0.2393 | −0.0233 | 1.0301 | 0.151* | |
| H16B | 0.2450 | 0.0334 | 1.1496 | 0.151* | |
| C17 | 0.08064 (15) | −0.06108 (16) | 0.9165 (4) | 0.0945 (11) | |
| H17B | 0.0860 | −0.1014 | 0.8610 | 0.142* | |
| H17A | 0.0359 | −0.0438 | 0.8997 | 0.142* | |
| H17C | 0.0869 | −0.0695 | 1.0224 | 0.142* | |
| H4 | 0.3667 (18) | 0.1176 (19) | 0.854 (4) | 0.103 (15)* |
| O1 | 0.0420 (8) | 0.0675 (11) | 0.0681 (11) | 0.0003 (8) | 0.0123 (8) | 0.0175 (9) |
| O2 | 0.0564 (10) | 0.0584 (11) | 0.0845 (13) | −0.0061 (8) | 0.0122 (9) | 0.0081 (10) |
| O3 | 0.0514 (10) | 0.0864 (14) | 0.0826 (13) | 0.0050 (9) | −0.0047 (9) | 0.0296 (11) |
| O4 | 0.0407 (10) | 0.0939 (16) | 0.0847 (15) | −0.0017 (9) | −0.0052 (9) | 0.0252 (13) |
| C1 | 0.0415 (12) | 0.0552 (14) | 0.0493 (13) | −0.0065 (10) | 0.0090 (10) | 0.0020 (12) |
| C2 | 0.0375 (11) | 0.0582 (14) | 0.0501 (13) | 0.0007 (11) | 0.0027 (10) | −0.0023 (12) |
| C3 | 0.0425 (12) | 0.0617 (15) | 0.0519 (13) | 0.0020 (11) | 0.0005 (10) | 0.0027 (12) |
| C4 | 0.0432 (12) | 0.0590 (15) | 0.0487 (13) | −0.0012 (11) | 0.0035 (10) | 0.0063 (11) |
| C5 | 0.0394 (11) | 0.0610 (15) | 0.0489 (13) | −0.0040 (10) | 0.0019 (10) | 0.0022 (12) |
| C6 | 0.0328 (11) | 0.0673 (16) | 0.0553 (13) | −0.0021 (11) | −0.0013 (10) | 0.0006 (12) |
| C7 | 0.0454 (12) | 0.0613 (16) | 0.0530 (14) | 0.0030 (11) | −0.0028 (11) | 0.0063 (12) |
| C8 | 0.0412 (12) | 0.0544 (14) | 0.0491 (13) | 0.0001 (10) | 0.0029 (10) | 0.0052 (11) |
| C9 | 0.0402 (11) | 0.0545 (14) | 0.0448 (12) | −0.0016 (10) | 0.0042 (10) | 0.0000 (11) |
| C10 | 0.0393 (11) | 0.0569 (14) | 0.0428 (12) | −0.0033 (10) | 0.0037 (9) | −0.0035 (11) |
| C11 | 0.0463 (13) | 0.094 (2) | 0.085 (2) | 0.0059 (14) | −0.0003 (13) | 0.0254 (17) |
| C12 | 0.0486 (13) | 0.0697 (17) | 0.0543 (15) | 0.0002 (12) | 0.0060 (11) | 0.0100 (13) |
| C13 | 0.0400 (12) | 0.0816 (18) | 0.0638 (16) | −0.0047 (12) | 0.0038 (11) | 0.0176 (14) |
| C14 | 0.0742 (19) | 0.124 (3) | 0.075 (2) | 0.0012 (18) | 0.0247 (16) | 0.020 (2) |
| C15 | 0.086 (2) | 0.097 (2) | 0.094 (2) | −0.0331 (19) | −0.0049 (17) | 0.024 (2) |
| C16 | 0.077 (2) | 0.119 (3) | 0.106 (2) | 0.002 (2) | −0.0097 (18) | 0.062 (2) |
| C17 | 0.084 (2) | 0.081 (2) | 0.119 (3) | −0.0242 (18) | 0.0142 (19) | 0.022 (2) |
| O1—C1 | 1.374 (3) | C8—C12 | 1.519 (3) |
| O1—C12 | 1.463 (3) | C9—C10 | 1.391 (3) |
| O2—C12 | 1.398 (3) | C11—H11B | 0.9600 |
| O2—C17 | 1.431 (3) | C11—H11C | 0.9600 |
| O3—C7 | 1.364 (3) | C11—H11A | 0.9600 |
| O3—C16 | 1.427 (3) | C12—H12 | 0.9800 |
| O4—C6 | 1.370 (3) | C13—C15 | 1.516 (4) |
| O4—H4 | 0.67 (3) | C13—C14 | 1.523 (4) |
| C1—C2 | 1.359 (3) | C13—H13 | 0.9800 |
| C1—C9 | 1.404 (3) | C14—H14A | 0.9600 |
| C2—C3 | 1.437 (3) | C14—H14C | 0.9600 |
| C2—C2i | 1.492 (4) | C14—H14B | 0.9600 |
| C3—C4 | 1.374 (3) | C15—H15B | 0.9600 |
| C3—C11 | 1.500 (3) | C15—H15A | 0.9600 |
| C4—C10 | 1.413 (3) | C15—H15C | 0.9600 |
| C4—H4A | 0.9300 | C16—H16C | 0.9600 |
| C5—C6 | 1.380 (3) | C16—H16A | 0.9600 |
| C5—C10 | 1.438 (3) | C16—H16B | 0.9600 |
| C5—C13 | 1.514 (3) | C17—H17B | 0.9600 |
| C6—C7 | 1.420 (3) | C17—H17A | 0.9600 |
| C7—C8 | 1.368 (3) | C17—H17C | 0.9600 |
| C8—C9 | 1.390 (3) | ||
| C1—O1—C12 | 108.35 (16) | H11B—C11—H11A | 109.5 |
| C12—O2—C17 | 113.6 (2) | H11C—C11—H11A | 109.5 |
| C7—O3—C16 | 118.3 (2) | O2—C12—O1 | 110.5 (2) |
| C6—O4—H4 | 108 (3) | O2—C12—C8 | 107.31 (18) |
| C2—C1—O1 | 127.89 (19) | O1—C12—C8 | 103.82 (18) |
| C2—C1—C9 | 122.3 (2) | O2—C12—H12 | 111.6 |
| O1—C1—C9 | 109.76 (19) | O1—C12—H12 | 111.6 |
| C1—C2—C3 | 115.48 (19) | C8—C12—H12 | 111.6 |
| C1—C2—C2i | 123.0 (2) | C5—C13—C15 | 113.8 (2) |
| C3—C2—C2i | 121.44 (19) | C5—C13—C14 | 111.3 (2) |
| C4—C3—C2 | 122.1 (2) | C15—C13—C14 | 111.8 (2) |
| C4—C3—C11 | 119.6 (2) | C5—C13—H13 | 106.5 |
| C2—C3—C11 | 118.3 (2) | C15—C13—H13 | 106.5 |
| C3—C4—C10 | 122.0 (2) | C14—C13—H13 | 106.5 |
| C3—C4—H4A | 119.0 | C13—C14—H14A | 109.5 |
| C10—C4—H4A | 119.0 | C13—C14—H14C | 109.5 |
| C6—C5—C10 | 117.0 (2) | H14A—C14—H14C | 109.5 |
| C6—C5—C13 | 122.44 (19) | C13—C14—H14B | 109.5 |
| C10—C5—C13 | 120.5 (2) | H14A—C14—H14B | 109.5 |
| O4—C6—C5 | 117.8 (2) | H14C—C14—H14B | 109.5 |
| O4—C6—C7 | 117.3 (2) | C13—C15—H15B | 109.5 |
| C5—C6—C7 | 124.81 (19) | C13—C15—H15A | 109.5 |
| O3—C7—C8 | 128.5 (2) | H15B—C15—H15A | 109.5 |
| O3—C7—C6 | 113.13 (19) | C13—C15—H15C | 109.5 |
| C8—C7—C6 | 118.4 (2) | H15B—C15—H15C | 109.5 |
| C7—C8—C9 | 116.9 (2) | H15A—C15—H15C | 109.5 |
| C7—C8—C12 | 137.0 (2) | O3—C16—H16C | 109.5 |
| C9—C8—C12 | 105.79 (18) | O3—C16—H16A | 109.5 |
| C8—C9—C10 | 126.9 (2) | H16C—C16—H16A | 109.5 |
| C8—C9—C1 | 110.1 (2) | O3—C16—H16B | 109.5 |
| C10—C9—C1 | 123.0 (2) | H16C—C16—H16B | 109.5 |
| C9—C10—C4 | 114.98 (19) | H16A—C16—H16B | 109.5 |
| C9—C10—C5 | 115.9 (2) | O2—C17—H17B | 109.5 |
| C4—C10—C5 | 129.1 (2) | O2—C17—H17A | 109.5 |
| C3—C11—H11B | 109.5 | H17B—C17—H17A | 109.5 |
| C3—C11—H11C | 109.5 | O2—C17—H17C | 109.5 |
| H11B—C11—H11C | 109.5 | H17B—C17—H17C | 109.5 |
| C3—C11—H11A | 109.5 | H17A—C17—H17C | 109.5 |
| C12—O1—C1—C2 | 172.7 (2) | C7—C8—C9—C1 | −176.7 (2) |
| C12—O1—C1—C9 | −9.9 (3) | C12—C8—C9—C1 | 8.3 (3) |
| O1—C1—C2—C3 | −179.4 (2) | C2—C1—C9—C8 | 178.3 (2) |
| C9—C1—C2—C3 | 3.6 (3) | O1—C1—C9—C8 | 0.8 (3) |
| O1—C1—C2—C2i | 3.4 (4) | C2—C1—C9—C10 | −1.0 (4) |
| C9—C1—C2—C2i | −173.7 (2) | O1—C1—C9—C10 | −178.6 (2) |
| C1—C2—C3—C4 | −3.4 (3) | C8—C9—C10—C4 | 178.9 (2) |
| C2i—C2—C3—C4 | 173.9 (2) | C1—C9—C10—C4 | −1.9 (3) |
| C1—C2—C3—C11 | 174.6 (2) | C8—C9—C10—C5 | −1.7 (3) |
| C2i—C2—C3—C11 | −8.1 (4) | C1—C9—C10—C5 | 177.5 (2) |
| C2—C3—C4—C10 | 0.6 (4) | C3—C4—C10—C9 | 2.0 (3) |
| C11—C3—C4—C10 | −177.4 (2) | C3—C4—C10—C5 | −177.2 (2) |
| C10—C5—C6—O4 | −179.0 (2) | C6—C5—C10—C9 | −0.4 (3) |
| C13—C5—C6—O4 | 2.7 (4) | C13—C5—C10—C9 | 177.8 (2) |
| C10—C5—C6—C7 | 1.6 (4) | C6—C5—C10—C4 | 178.8 (2) |
| C13—C5—C6—C7 | −176.6 (2) | C13—C5—C10—C4 | −2.9 (4) |
| C16—O3—C7—C8 | −10.0 (4) | C17—O2—C12—O1 | −68.7 (3) |
| C16—O3—C7—C6 | 171.4 (2) | C17—O2—C12—C8 | 178.7 (2) |
| O4—C6—C7—O3 | −1.3 (3) | C1—O1—C12—O2 | −100.5 (2) |
| C5—C6—C7—O3 | 178.0 (2) | C1—O1—C12—C8 | 14.3 (2) |
| O4—C6—C7—C8 | 179.9 (2) | C7—C8—C12—O2 | −70.0 (4) |
| C5—C6—C7—C8 | −0.8 (4) | C9—C8—C12—O2 | 103.5 (2) |
| O3—C7—C8—C9 | −179.8 (2) | C7—C8—C12—O1 | 172.9 (3) |
| C6—C7—C8—C9 | −1.3 (4) | C9—C8—C12—O1 | −13.6 (2) |
| O3—C7—C8—C12 | −6.8 (5) | C6—C5—C13—C15 | −64.3 (3) |
| C6—C7—C8—C12 | 171.7 (3) | C10—C5—C13—C15 | 117.5 (3) |
| C7—C8—C9—C10 | 2.6 (4) | C6—C5—C13—C14 | 63.1 (3) |
| C12—C8—C9—C10 | −172.4 (2) | C10—C5—C13—C14 | −115.1 (3) |
| H··· | ||||
| O4—H4···O3 | 0.67 (3) | 2.17 (4) | 2.586 (3) | 122 (4) |
| C17—H17 | 0.96 | 2.71 | 3.286 (3) | 119 |
| C17—H17 | 0.96 | 2.77 | 3.551 (4) | 139 |