Literature DB >> 25877200

A resource for cell line authentication, annotation and quality control.

Mamie Yu1, Suresh K Selvaraj1, May M Y Liang-Chu1, Sahar Aghajani2, Matthew Busse2, Jean Yuan2, Genee Lee1, Franklin Peale3, Christiaan Klijn2, Richard Bourgon2, Joshua S Kaminker2, Richard M Neve1.   

Abstract

Cell line misidentification, contamination and poor annotation affect scientific reproducibility. Here we outline simple measures to detect or avoid cross-contamination, present a framework for cell line annotation linked to short tandem repeat and single nucleotide polymorphism profiles, and provide a catalogue of synonymous cell lines. This resource will enable our community to eradicate the use of misidentified lines and generate credible cell-based data.

Mesh:

Year:  2015        PMID: 25877200     DOI: 10.1038/nature14397

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  29 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Identity crisis.

Authors: 
Journal:  Nature       Date:  2009-02-19       Impact factor: 49.962

3.  Reliability of DNA-based sex tests.

Authors:  F R Santos; A Pandya; C Tyler-Smith
Journal:  Nat Genet       Date:  1998-02       Impact factor: 38.330

4.  Cell Biology. Fixing problems with cell lines.

Authors:  Jon R Lorsch; Francis S Collins; Jennifer Lippincott-Schwartz
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

5.  STR DNA typing of human cell lines: detection of intra- and interspecies cross-contamination.

Authors:  Wilhelm G Dirks; Hans G Drexler
Journal:  Methods Mol Biol       Date:  2013

6.  Cell line cross-contamination: how aware are Mammalian cell culturists of the problem and how to monitor it?

Authors:  Gertrude Case Buehring; Elizabeth A Eby; Michael J Eby
Journal:  In Vitro Cell Dev Biol Anim       Date:  2004 Jul-Aug       Impact factor: 2.416

7.  Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing.

Authors:  Jianjun Zhang; Junya Fujimoto; Jianhua Zhang; David C Wedge; Xingzhi Song; Jiexin Zhang; Sahil Seth; Chi-Wan Chow; Yu Cao; Curtis Gumbs; Kathryn A Gold; Neda Kalhor; Latasha Little; Harshad Mahadeshwar; Cesar Moran; Alexei Protopopov; Huandong Sun; Jiabin Tang; Xifeng Wu; Yuanqing Ye; William N William; J Jack Lee; John V Heymach; Waun Ki Hong; Stephen Swisher; Ignacio I Wistuba; P Andrew Futreal
Journal:  Science       Date:  2014-10-10       Impact factor: 47.728

8.  COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

Authors:  Simon A Forbes; Nidhi Bindal; Sally Bamford; Charlotte Cole; Chai Yin Kok; David Beare; Mingming Jia; Rebecca Shepherd; Kenric Leung; Andrew Menzies; Jon W Teague; Peter J Campbell; Michael R Stratton; P Andrew Futreal
Journal:  Nucleic Acids Res       Date:  2010-10-15       Impact factor: 16.971

9.  SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy.

Authors:  John P Didion; Ryan J Buus; Zohreh Naghashfar; David W Threadgill; Herbert C Morse; Fernando Pardo-Manuel de Villena
Journal:  BMC Genomics       Date:  2014-10-03       Impact factor: 3.969

10.  Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines.

Authors:  Paolo Romano; Assunta Manniello; Ottavia Aresu; Massimiliano Armento; Michela Cesaro; Barbara Parodi
Journal:  Nucleic Acids Res       Date:  2008-10-15       Impact factor: 16.971

View more
  88 in total

Review 1.  Hallmarks of pluripotency.

Authors:  Alejandro De Los Angeles; Francesco Ferrari; Ruibin Xi; Yuko Fujiwara; Nissim Benvenisty; Hongkui Deng; Konrad Hochedlinger; Rudolf Jaenisch; Soohyun Lee; Harry G Leitch; M William Lensch; Ernesto Lujan; Duanqing Pei; Janet Rossant; Marius Wernig; Peter J Park; George Q Daley
Journal:  Nature       Date:  2015-09-24       Impact factor: 49.962

2.  Reproducibility blues.

Authors:  Bernd Pulverer
Journal:  EMBO J       Date:  2015-11-04       Impact factor: 11.598

3.  Evaluation genotypes of cancer cell lines HCC1954 and SiHa by short tandem repeat (STR) analysis and DNA sequencing.

Authors:  Jiewen Fu; Jingliang Cheng; Xiaoyan Liu; Jun Li; Chunli Wei; Xiaoli Zheng; Tao He; Junjiang Fu
Journal:  Mol Biol Rep       Date:  2018-11-02       Impact factor: 2.316

4.  Assessing the Viability of a Synthetic Bacterial Consortium on the In Vitro Gut Host-microbe Interface.

Authors:  Marta Calatayud Arroyo; Tom Van de Wiele; Emma Hernandez-Sanabria
Journal:  J Vis Exp       Date:  2018-07-04       Impact factor: 1.355

5.  MYB fusions and CD markers as tools for authentication and purification of cancer stem cells from salivary adenoid cystic carcinoma.

Authors:  Alex Panaccione; Yi Zhang; Molly Ryan; Christopher A Moskaluk; Karen S Anderson; Wendell G Yarbrough; Sergey V Ivanov
Journal:  Stem Cell Res       Date:  2017-05-05       Impact factor: 2.020

Review 6.  An Interactive Resource to Probe Genetic Diversity and Estimated Ancestry in Cancer Cell Lines.

Authors:  Julie Dutil; Zhihua Chen; Alvaro N Monteiro; Jamie K Teer; Steven A Eschrich
Journal:  Cancer Res       Date:  2019-03-20       Impact factor: 12.701

7.  Establishment and Characterization of Four Novel Thyroid Cancer Cell Lines and PDX Models Expressing the RET/PTC1 Rearrangement, BRAFV600E, or RASQ61R as Drivers.

Authors:  Rebecca E Schweppe; Nikita Pozdeyev; Laura A Pike; Christopher Korch; Qiong Zhou; Sharon B Sams; Vibha Sharma; Umarani Pugazhenthi; Christopher Raeburn; Maria B Albuja-Cruz; Philip Reigan; Daniel V LaBarbera; Iñigo Landa; Jeffrey A Knauf; James A Fagin; Bryan R Haugen
Journal:  Mol Cancer Res       Date:  2019-02-07       Impact factor: 5.852

8.  Reproducible pharmacogenomic profiling of cancer cell line panels.

Authors:  Peter M Haverty; Eva Lin; Jenille Tan; Yihong Yu; Billy Lam; Steve Lianoglou; Richard M Neve; Scott Martin; Jeff Settleman; Robert L Yauch; Richard Bourgon
Journal:  Nature       Date:  2016-05-19       Impact factor: 49.962

Review 9.  Raising the standards of stem cell line quality.

Authors:  Michael P Yaffe; Scott A Noggle; Susan L Solomon
Journal:  Nat Cell Biol       Date:  2016-03       Impact factor: 28.824

10.  Accelerating Biomedical Discoveries through Rigor and Transparency.

Authors:  Judith A Hewitt; Liliana L Brown; Stephanie J Murphy; Franziska Grieder; Shai D Silberberg
Journal:  ILAR J       Date:  2017-07-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.