Literature DB >> 25871264

Local Structure and Dynamics of Hydration Water in Intrinsically Disordered Proteins.

Pooja Rani1, Parbati Biswas1.   

Abstract

Hydration water around protein surface plays a key role in structure, folding and dynamics of proteins. Intrinsically disordered proteins lack secondary and/or tertiary structure in their native state. Thus, characterizing the local structure and dynamics of hydration water around disordered proteins is challenging for both experimentalists and theoreticians. The local structure, orientation and dynamics of hydration water in the vicinity of intrinsically disordered proteins is investigated through molecular dynamics simulations. The analysis of the hydration capacity reveals that the disordered proteins have much larger binding capacity for hydration water than globular proteins. The surface and radial distribution of water molecules around the disordered proteins depict a similar trend. The local structure of the hydration water evaluated in terms of the tetrahedral order parameter, shows a higher order among the water molecules surrounding disordered proteins/regions. The residence time of water molecules clearly exhibits slow dynamics of hydration water around the surface of disordered proteins/regions as compared to globular proteins. The orientation of water molecules is found to be distinctly different for ordered and disordered proteins/regions. This analysis provides a better insight into the structure and dynamics of hydration water around disordered proteins.

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Year:  2015        PMID: 25871264     DOI: 10.1021/jp511961c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

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2.  The origin and impact of bound water around intrinsically disordered proteins.

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7.  Cation-π interactions drive hydrophobic self-assembly and aggregation of niclosamide in water.

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9.  Small Angle Neutron Scattering Studies of R67 Dihydrofolate Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini.

Authors:  Purva P Bhojane; Michael R Duff; Khushboo Bafna; Pratul Agarwal; Christopher Stanley; Elizabeth E Howell
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10.  Mechanism-Dependent Modulation of Ultrafast Interfacial Water Dynamics in Intrinsically Disordered Protein Complexes.

Authors:  Aritra Chowdhury; Sergey A Kovalenko; Iker Valle Aramburu; Piau Siong Tan; Nikolaus P Ernsting; Edward A Lemke
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  10 in total

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