Literature DB >> 25866124

Emerging commercial molecular tests for the diagnosis of bloodstream infection.

Solomon Mwaigwisya1, Rasha Assad M Assiri, Justin O'Grady.   

Abstract

Bloodstream infection (BSI) by microorganisms can lead to sepsis. This condition has a high mortality rate, which rises significantly with delays in initiation of appropriate antimicrobial treatment. Current culture methods for diagnosing BSI have long turnaround times and poor clinical sensitivity. While clinicians wait for culture diagnosis, patients are treated empirically, which can result in inappropriate treatment, undesirable side effects and contribute to drug resistance development. Molecular diagnostics assays that target pathogen DNA can identify pathogens and resistance markers within hours. Early diagnosis improves antibiotic stewardship and is associated with favorable clinical outcomes. Nonetheless, limitations of current molecular diagnostic methods are substantial. This article reviews recent commercially available molecular methods that use pathogen DNA to diagnose BSI, either by testing positive blood cultures or directly testing patient blood. We critically assess these tests and their application in clinical microbiology. A view of future directions in BSI diagnosis is also provided.

Entities:  

Keywords:  MALDI-TOF; NGS; PCR; PCR/ESI-MS; antibiotic resistance; blood culture; blood stream infection; molecular diagnostics; next-generation sequencing; sepsis

Mesh:

Substances:

Year:  2015        PMID: 25866124     DOI: 10.1586/14737159.2015.1029459

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  11 in total

1.  Direct Screening of Blood by PCR and Pyrosequencing for a 16S rRNA Gene Target from Emergency Department and Intensive Care Unit Patients Being Evaluated for Bloodstream Infection.

Authors:  M S Moore; M G McCarroll; C D McCann; L May; N Younes; J A Jordan
Journal:  J Clin Microbiol       Date:  2015-10-28       Impact factor: 5.948

2.  Rapid visualization and detection of Staphylococcus aureus based on loop-mediated isothermal amplification.

Authors:  Chuan Wu; Yuanyuan Zeng; Yang He
Journal:  World J Microbiol Biotechnol       Date:  2021-11-01       Impact factor: 3.312

3.  Impact of Sepsis Flow Chip, a novelty fast microbiology method, in the treatment of bacteremia caused by Gram-negative bacilli.

Authors:  E Merino; A Gimeno; M Alcalde; J Coy; V Boix; C Molina-Pardines; M P Ventero; A Galiana; E Caro; J C Rodríguez
Journal:  Rev Esp Quimioter       Date:  2021-03-23       Impact factor: 1.553

4.  A technical application of quantitative next generation sequencing for chimerism evaluation.

Authors:  Michelangelo Aloisio; Danilo Licastro; Luciana Caenazzo; Valentina Torboli; Angela D'Eustacchio; Giovanni Maria Severini; Emmanouil Athanasakis
Journal:  Mol Med Rep       Date:  2016-08-04       Impact factor: 2.952

5.  Microbial Typing by Machine Learned DNA Melt Signatures.

Authors:  Nadya Andini; Bo Wang; Pornpat Athamanolap; Justin Hardick; Billie J Masek; Simone Thair; Anne Hu; Gideon Avornu; Stephen Peterson; Steven Cogill; Richard E Rothman; Karen C Carroll; Charlotte A Gaydos; Jeff Tza-Huei Wang; Serafim Batzoglou; Samuel Yang
Journal:  Sci Rep       Date:  2017-02-06       Impact factor: 4.379

6.  Evaluation of the Sepsis Flow Chip assay for the diagnosis of blood infections.

Authors:  Antonio Galiana; Javier Coy; Adelina Gimeno; Noemi Marco Guzman; Francisco Rosales; Esperanza Merino; Gloria Royo; Juan Carlos Rodríguez
Journal:  PLoS One       Date:  2017-05-18       Impact factor: 3.240

7.  Development and first evaluation of a novel multiplex real-time PCR on whole blood samples for rapid pathogen identification in critically ill patients with sepsis.

Authors:  Kirsten van de Groep; Martine P Bos; Paul H M Savelkoul; Anna Rubenjan; Christel Gazenbeek; Willem J G Melchers; Tom van der Poll; Nicole P Juffermans; David S Y Ong; Marc J M Bonten; Olaf L Cremer
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2018-04-26       Impact factor: 3.267

8.  Detection of pathogenic microorganisms from bloodstream infection specimens using TaqMan array card technology.

Authors:  Chao Zhang; Xin Zheng; Chengna Zhao; Yan Li; Shuiping Chen; Gang Liu; Chengbin Wang; Qingyu Lv; Peng Liu; Yuling Zheng; Decong Kong; Hua Jiang; Yongqiang Jiang
Journal:  Sci Rep       Date:  2018-08-27       Impact factor: 4.379

9.  A Rapid Single-Cell Antimicrobial Susceptibility Testing Workflow for Bloodstream Infections.

Authors:  Britney Forsyth; Peter Torab; Jyong-Huei Lee; Tyler Malcom; Tza-Huei Wang; Joseph C Liao; Samuel Yang; Erik Kvam; Chris Puleo; Pak Kin Wong
Journal:  Biosensors (Basel)       Date:  2021-08-22

10.  Duplex DNA-Invading γ-Modified Peptide Nucleic Acids Enable Rapid Identification of Bloodstream Infections in Whole Blood.

Authors:  Jörk Nölling; Srinivas Rapireddy; Joel I Amburg; Elizabeth M Crawford; Ranjit A Prakash; Arthur R Rabson; Yi-Wei Tang; Alon Singer
Journal:  mBio       Date:  2016-04-19       Impact factor: 7.867

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