Literature DB >> 25861055

CranialCloud: a cloud-based architecture to support trans-institutional collaborative efforts in neurodegenerative disorders.

Pierre-François D'Haese1, Peter E Konrad, Srivatsan Pallavaram, Rui Li, Priyanka Prassad, William Rodriguez, Benoit M Dawant.   

Abstract

PURPOSE: Neurological diseases have a devastating impact on millions of individuals and their families. These diseases will continue to constitute a significant research focus for this century. The search for effective treatments and cures requires multiple teams of experts in clinical neurosciences, neuroradiology, engineering, and industry. Hence, the need to communicate a large amount of information with accuracy and precision is more necessary than ever for this specialty.
METHODS: In this paper, we present a distributed system that supports this vision, which we call the CranialVault Cloud (CranialCloud). It consists in a network of nodes, each with the capability to store and process data, that share the same spatial normalization processes, thus guaranteeing a common reference space. We detail and justify design choices, the architecture and functionality of individual nodes, the way these nodes interact, and how the distributed system can be used to support inter-institutional research.
RESULTS: We discuss the current state of the system that gathers data for more than 1,600 patients and how we envision it to grow.
CONCLUSION: We contend that the fastest way to find and develop promising treatments and cures is to permit teams of researchers to aggregate data, spatially normalize these data, and share them. The CranialVault system is a system that supports this vision.

Entities:  

Mesh:

Year:  2015        PMID: 25861055      PMCID: PMC4451426          DOI: 10.1007/s11548-015-1189-y

Source DB:  PubMed          Journal:  Int J Comput Assist Radiol Surg        ISSN: 1861-6410            Impact factor:   2.924


  20 in total

1.  CranialVault and its CRAVE tools: a clinical computer assistance system for deep brain stimulation (DBS) therapy.

Authors:  Pierre-François D'Haese; Srivatsan Pallavaram; Rui Li; Michael S Remple; Chris Kao; Joseph S Neimat; Peter E Konrad; Benoit M Dawant
Journal:  Med Image Anal       Date:  2010-08-01       Impact factor: 8.545

2.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

3.  Data sharing for computational neuroscience.

Authors:  Jeffrey L Teeters; Kenneth D Harris; K Jarrod Millman; Bruno A Olshausen; Friedrich T Sommer
Journal:  Neuroinformatics       Date:  2008-02-08

4.  Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.

Authors:  Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde
Journal:  J Biomed Inform       Date:  2008-09-30       Impact factor: 6.317

5.  Visualization of intra-thalamic nuclei with optimized white-matter-nulled MPRAGE at 7T.

Authors:  Thomas Tourdias; Manojkumar Saranathan; Ives R Levesque; Jason Su; Brian K Rutt
Journal:  Neuroimage       Date:  2013-09-07       Impact factor: 6.556

6.  Fast free-form deformation using graphics processing units.

Authors:  Marc Modat; Gerard R Ridgway; Zeike A Taylor; Manja Lehmann; Josephine Barnes; David J Hawkes; Nick C Fox; Sébastien Ourselin
Journal:  Comput Methods Programs Biomed       Date:  2009-10-08       Impact factor: 5.428

7.  A community spring for neuroscience data sharing.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2014-10

8.  Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Authors:  Ralph O Suarez; Olivier Commowick; Sanjay P Prabhu; Simon K Warfield
Journal:  Neuroimage       Date:  2011-11-27       Impact factor: 6.556

9.  Ways toward an early diagnosis in Alzheimer's disease: the Alzheimer's Disease Neuroimaging Initiative (ADNI).

Authors:  Susanne G Mueller; Michael W Weiner; Leon J Thal; Ronald C Petersen; Clifford R Jack; William Jagust; John Q Trojanowski; Arthur W Toga; Laurel Beckett
Journal:  Alzheimers Dement       Date:  2005-07       Impact factor: 21.566

10.  COINS: An Innovative Informatics and Neuroimaging Tool Suite Built for Large Heterogeneous Datasets.

Authors:  Adam Scott; Will Courtney; Dylan Wood; Raul de la Garza; Susan Lane; Margaret King; Runtang Wang; Jody Roberts; Jessica A Turner; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2011-12-23       Impact factor: 4.081

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  9 in total

1.  Effects of surgical targeting in laser interstitial thermal therapy for mesial temporal lobe epilepsy: A multicenter study of 234 patients.

Authors:  Chengyuan Wu; Walter J Jermakowicz; Srijata Chakravorti; Iahn Cajigas; Ashwini D Sharan; Jonathan R Jagid; Caio M Matias; Michael R Sperling; Robert Buckley; Andrew Ko; Jeffrey G Ojemann; John W Miller; Brett Youngerman; Sameer A Sheth; Guy M McKhann; Adrian W Laxton; Daniel E Couture; Gautam S Popli; Alexander Smith; Ashesh D Mehta; Allen L Ho; Casey H Halpern; Dario J Englot; Joseph S Neimat; Peter E Konrad; Elliot Neal; Fernando L Vale; Kathryn L Holloway; Ellen L Air; Jason Schwalb; Benoit M Dawant; Pierre-Francois D'Haese
Journal:  Epilepsia       Date:  2019-05-21       Impact factor: 5.864

2.  Analytical modeling and feasibility study of a multi-GPU cloud-based server (MGCS) framework for non-voxel-based dose calculations.

Authors:  J Neylon; Y Min; P Kupelian; D A Low; A Santhanam
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-08-25       Impact factor: 2.924

3.  Pallidal stimulation in Parkinson disease differentially modulates local and network β activity.

Authors:  Mahsa Malekmohammadi; Yalda Shahriari; Nicholas AuYong; Andrew O'Keeffe; Yvette Bordelon; Xiao Hu; Nader Pouratian
Journal:  J Neural Eng       Date:  2018-07-04       Impact factor: 5.379

4.  Predicting response to psychiatric surgery: a systematic review of neuroimaging findings.

Authors:  Benjamin Davidson; Hrishikesh Suresh; Maged Goubran; Jennifer S Rabin; Ying Meng; Karim Mithani; Christopher B Pople; Peter Giacobbe; Clement Hamani; Nir Lipsman
Journal:  J Psychiatry Neurosci       Date:  2020-11-01       Impact factor: 6.186

5.  Neuroethics of Neuromodulation: An Update.

Authors:  Peter Zuk; Laura Torgerson; Demetrio Sierra-Mercado; Gabriel Lázaro-Muñoz
Journal:  Curr Opin Biomed Eng       Date:  2018-10-26

6.  Quantifying axonal responses in patient-specific models of subthalamic deep brain stimulation.

Authors:  Kabilar Gunalan; Bryan Howell; Cameron C McIntyre
Journal:  Neuroimage       Date:  2018-01-10       Impact factor: 6.556

7.  A Driving-Force Predictor for Estimating Pathway Activation in Patient-Specific Models of Deep Brain Stimulation.

Authors:  Bryan Howell; Kabilar Gunalan; Cameron C McIntyre
Journal:  Neuromodulation       Date:  2019-02-18

8.  Proceedings of the Sixth Deep Brain Stimulation Think Tank Modulation of Brain Networks and Application of Advanced Neuroimaging, Neurophysiology, and Optogenetics.

Authors:  Adolfo Ramirez-Zamora; James Giordano; Edward S Boyden; Viviana Gradinaru; Aysegul Gunduz; Philip A Starr; Sameer A Sheth; Cameron C McIntyre; Michael D Fox; Jerrold Vitek; Vinata Vedam-Mai; Umer Akbar; Leonardo Almeida; Helen M Bronte-Stewart; Helen S Mayberg; Nader Pouratian; Aryn H Gittis; Annabelle C Singer; Meaghan C Creed; Gabriel Lazaro-Munoz; Mark Richardson; Marvin A Rossi; Leopoldo Cendejas-Zaragoza; Pierre-Francois D'Haese; Winston Chiong; Ro'ee Gilron; Howard Chizeck; Andrew Ko; Kenneth B Baker; Joost Wagenaar; Noam Harel; Wissam Deeb; Kelly D Foote; Michael S Okun
Journal:  Front Neurosci       Date:  2019-09-12       Impact factor: 4.677

9.  The Role of Large-Scale Data Infrastructure in Developing Next-Generation Deep Brain Stimulation Therapies.

Authors:  Witney Chen; Lowry Kirkby; Miro Kotzev; Patrick Song; Ro'ee Gilron; Brian Pepin
Journal:  Front Hum Neurosci       Date:  2021-09-06       Impact factor: 3.169

  9 in total

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