Literature DB >> 25857734

The genome sequence of four isolates from the family Lichtheimiaceae.

Marcus C Chibucos1, Kizee A Etienne2, Joshua Orvis3, Hongkyu Lee4, Sean Daugherty3, Shawn R Lockhart2, Ashraf S Ibrahim5, Vincent M Bruno6.   

Abstract

This study reports the release of draft genome sequences of two isolates of Lichtheimia corymbifera and two isolates of L. ramosa. Phylogenetic analyses indicate that the two L. corymbifera strains (CDC-B2541 and 008-049) are closely related to the previously sequenced L. corymbifera isolate (FSU 9682) while our two L. ramosa strains CDC-B5399 and CDC-B5792 cluster apart from them. These genome sequences will further the understanding of intraspecies and interspecies genetic variation within the Mucoraceae family of pathogenic fungi. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Lichtheimia; Mucorales; Rhizopus; fungal genomics; fungal phylogeny; mucormycosis

Mesh：

Year:  2015        PMID： 25857734      PMCID： PMC4467520          DOI： 10.1093/femspd/ftv024

Source DB:  PubMed          Journal:  Pathog Dis        ISSN： 2049-632X            Impact factor:   3.166


  31 in total

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Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

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Authors:  Aleksey V Zimin; Guillaume Marçais; Daniela Puiu; Michael Roberts; Steven L Salzberg; James A Yorke
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3.  New evidence of the involvement of Lichtheimia corymbifera in farmer's lung disease.

Authors:  Anne-Pauline Bellanger; Gabriel Reboux; Françoise Botterel; Charline Candido; Sandrine Roussel; Benedicte Rognon; Jean-Charles Dalphin; Stephane Bretagne; Laurence Millon
Journal:  Med Mycol       Date:  2010-11       Impact factor: 4.076

Review 4.  Mucormycoses caused by Lichtheimia species.

Authors:  Volker U Schwartze; Ilse D Jacobsen
Journal:  Mycoses       Date:  2014-09-03       Impact factor: 4.377

5.  Spectrum of zygomycete species identified in clinically significant specimens in the United States.

Authors:  E Alvarez; D A Sutton; J Cano; A W Fothergill; A Stchigel; M G Rinaldi; J Guarro
Journal:  J Clin Microbiol       Date:  2009-04-22       Impact factor: 5.948

6.  Mucormycosis as a rare cause of severe gastrointestinal bleeding after multivisceral transplantation.

Authors:  S Irtan; M Lamerain; F Lesage; V Verkarre; M-E Bougnoux; F Lanternier; J R Zahar; N Salvi; C Talbotec; O Lortholary; F Lacaille; C Chardot
Journal:  Transpl Infect Dis       Date:  2013-09-18       Impact factor: 2.228

7.  Three cases of cutaneous mucormycosis with Lichtheimia spp. (ex Absidia/Mycocladus) in ICU. Possible cross-transmission in an intensive care unit between 2 cases.

Authors:  P Poirier; C Nourrisson; L Gibold; E Chalus; D Guelon; S Descamp; O Traore; M Cambon; C Aumeran
Journal:  J Mycol Med       Date:  2013-10-18       Impact factor: 2.391

8.  Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).

Authors:  Volker U Schwartze; Sascha Winter; Ekaterina Shelest; Marina Marcet-Houben; Fabian Horn; Stefanie Wehner; Jörg Linde; Vito Valiante; Michael Sammeth; Konstantin Riege; Minou Nowrousian; Kerstin Kaerger; Ilse D Jacobsen; Manja Marz; Axel A Brakhage; Toni Gabaldón; Sebastian Böcker; Kerstin Voigt
Journal:  PLoS Genet       Date:  2014-08-14       Impact factor: 5.917

9.  Full-length transcriptome assembly from RNA-Seq data without a reference genome.

Authors:  Manfred G Grabherr; Brian J Haas; Moran Yassour; Joshua Z Levin; Dawn A Thompson; Ido Amit; Xian Adiconis; Lin Fan; Raktima Raychowdhury; Qiandong Zeng; Zehua Chen; Evan Mauceli; Nir Hacohen; Andreas Gnirke; Nicholas Rhind; Federica di Palma; Bruce W Birren; Chad Nusbaum; Kerstin Lindblad-Toh; Nir Friedman; Aviv Regev
Journal:  Nat Biotechnol       Date:  2011-05-15       Impact factor: 54.908

10.  De Novo Whole-Genome Sequence and Genome Annotation of Lichtheimia ramosa.

Authors:  Jörg Linde; Volker Schwartze; Ulrike Binder; Cornelia Lass-Flörl; Kerstin Voigt; Fabian Horn
Journal:  Genome Announc       Date:  2014-09-11
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  2 in total

1.  Vaginal Candida spp. genomes from women with vulvovaginal candidiasis.

Authors:  L Latéy Bradford; Marcus C Chibucos; Bing Ma; Vincent Bruno; Jacques Ravel
Journal:  Pathog Dis       Date:  2017-08-31       Impact factor: 3.166

2.  An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.

Authors:  Marcus C Chibucos; Sameh Soliman; Teclegiorgis Gebremariam; Hongkyu Lee; Sean Daugherty; Joshua Orvis; Amol C Shetty; Jonathan Crabtree; Tracy H Hazen; Kizee A Etienne; Priti Kumari; Timothy D O'Connor; David A Rasko; Scott G Filler; Claire M Fraser; Shawn R Lockhart; Christopher D Skory; Ashraf S Ibrahim; Vincent M Bruno
Journal:  Nat Commun       Date:  2016-07-22       Impact factor: 14.919
  2 in total

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