Literature DB >> 25855788

Cell-surface Attachment of Bacterial Multienzyme Complexes Involves Highly Dynamic Protein-Protein Anchors.

Kate Cameron1, Shabir Najmudin2, Victor D Alves1, Edward A Bayer3, Steven P Smith4, Pedro Bule1, Helen Waller5, Luís M A Ferreira1, Harry J Gilbert5, Carlos M G A Fontes6.   

Abstract

Protein-protein interactions play a pivotal role in the assembly of the cellulosome, one of nature's most intricate nanomachines dedicated to the depolymerization of complex carbohydrates. The integration of cellulosomal components usually occurs through the binding of type I dockerin modules located at the C terminus of the enzymes to cohesin modules located in the primary scaffoldin subunit. Cellulosomes are typically recruited to the cell surface via type II cohesin-dockerin interactions established between primary and cell-surface anchoring scaffoldin subunits. In contrast with type II interactions, type I dockerins usually display a dual binding mode that may allow increased conformational flexibility during cellulosome assembly. Acetivibrio cellulolyticus produces a highly complex cellulosome comprising an unusual adaptor scaffoldin, ScaB, which mediates the interaction between the primary scaffoldin, ScaA, through type II cohesin-dockerin interactions and the anchoring scaffoldin, ScaC, via type I cohesin-dockerin interactions. Here, we report the crystal structure of the type I ScaB dockerin in complex with a type I ScaC cohesin in two distinct orientations. The data show that the ScaB dockerin displays structural symmetry, reflected by the presence of two essentially identical binding surfaces. The complex interface is more extensive than those observed in other type I complexes, which results in an ultra-high affinity interaction (Ka ∼10(12) M). A subset of ScaB dockerin residues was also identified as modulating the specificity of type I cohesin-dockerin interactions in A. cellulolyticus. This report reveals that recruitment of cellulosomes onto the cell surface may involve dockerins presenting a dual binding mode to incorporate additional flexibility into the quaternary structure of highly populated multienzyme complexes.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  cell surface; cell-surface attachment; cellulase; cellulose; cellulosome; protein-protein interaction

Mesh:

Substances:

Year:  2015        PMID: 25855788      PMCID: PMC4505603          DOI: 10.1074/jbc.M114.633339

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  27 in total

1.  A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA.

Authors:  E Leibovitz; P Béguin
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

2.  Cohesin-dockerin microarray: Diverse specificities between two complementary families of interacting protein modules.

Authors:  Rachel Haimovitz; Yoav Barak; Ely Morag; Milana Voronov-Goldman; Yuval Shoham; Raphael Lamed; Edward A Bayer
Journal:  Proteomics       Date:  2008-03       Impact factor: 3.984

3.  A novel cellulosomal scaffoldin from Acetivibrio cellulolyticus that contains a family 9 glycosyl hydrolase.

Authors:  S Y Ding; E A Bayer; D Steiner; Y Shoham; R Lamed
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

4.  The Clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner.

Authors:  Benedita A Pinheiro; Mark R Proctor; Carlos Martinez-Fleites; José A M Prates; Victoria A Money; Gideon J Davies; Edward A Bayer; Carlos M G A Fontesm; Henri-Pierre Fierobe; Harry J Gilbert
Journal:  J Biol Chem       Date:  2008-04-28       Impact factor: 5.157

5.  Purification, crystallization and preliminary X-ray characterization of the Acetivibrio cellulolyticus type I cohesin ScaC in complex with the ScaB dockerin.

Authors:  Kate Cameron; Victor D Alves; Pedro Bule; Luís M A Ferreira; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-08-30

6.  Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system.

Authors:  Bareket Dassa; Ilya Borovok; Raphael Lamed; Bernard Henrissat; Pedro Coutinho; Christopher L Hemme; Yue Huang; Jizhong Zhou; Edward A Bayer
Journal:  BMC Genomics       Date:  2012-05-30       Impact factor: 3.969

7.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

8.  Characterization of a double dockerin from the cellulosome of the anaerobic fungus Piromyces equi.

Authors:  Tibor Nagy; Richard B Tunnicliffe; Lee D Higgins; Chris Walters; Harry J Gilbert; Mike P Williamson
Journal:  J Mol Biol       Date:  2007-08-19       Impact factor: 5.469

9.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  8 in total

1.  Structure-function analyses generate novel specificities to assemble the components of multienzyme bacterial cellulosome complexes.

Authors:  Pedro Bule; Kate Cameron; José A M Prates; Luís M A Ferreira; Steven P Smith; Harry J Gilbert; Edward A Bayer; Shabir Najmudin; Carlos M G A Fontes; Victor D Alves
Journal:  J Biol Chem       Date:  2018-01-24       Impact factor: 5.157

2.  Single Binding Mode Integration of Hemicellulose-degrading Enzymes via Adaptor Scaffoldins in Ruminococcus flavefaciens Cellulosome.

Authors:  Pedro Bule; Victor D Alves; André Leitão; Luís M A Ferreira; Edward A Bayer; Steven P Smith; Harry J Gilbert; Shabir Najmudin; Carlos M G A Fontes
Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

3.  Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules.

Authors:  Xingzhe Yao; Chao Chen; Yefei Wang; Sheng Dong; Ya-Jun Liu; Yifei Li; Zhenling Cui; Weibin Gong; Sarah Perrett; Lishan Yao; Raphael Lamed; Edward A Bayer; Qiu Cui; Yingang Feng
Journal:  Sci Adv       Date:  2020-10-23       Impact factor: 14.136

4.  Diverse specificity of cellulosome attachment to the bacterial cell surface.

Authors:  Joana L A Brás; Benedita A Pinheiro; Kate Cameron; Fiona Cuskin; Aldino Viegas; Shabir Najmudin; Pedro Bule; Virginia M R Pires; Maria João Romão; Edward A Bayer; Holly L Spencer; Steven Smith; Harry J Gilbert; Victor D Alves; Ana Luísa Carvalho; Carlos M G A Fontes
Journal:  Sci Rep       Date:  2016-12-07       Impact factor: 4.379

5.  Template-based quaternary structure prediction of proteins using enhanced profile-profile alignments.

Authors:  Tsukasa Nakamura; Toshiyuki Oda; Yoshinori Fukasawa; Kentaro Tomii
Journal:  Proteins       Date:  2017-12-05

6.  Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes.

Authors:  Pedro Bule; Victor D Alves; Vered Israeli-Ruimy; Ana L Carvalho; Luís M A Ferreira; Steven P Smith; Harry J Gilbert; Shabir Najmudin; Edward A Bayer; Carlos M G A Fontes
Journal:  Sci Rep       Date:  2017-04-07       Impact factor: 4.379

7.  Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction.

Authors:  Pedro Bule; Virgínia M R Pires; Victor D Alves; Ana Luísa Carvalho; José A M Prates; Luís M A Ferreira; Steven P Smith; Harry J Gilbert; Ilit Noach; Edward A Bayer; Shabir Najmudin; Carlos M G A Fontes
Journal:  Sci Rep       Date:  2018-05-03       Impact factor: 4.379

8.  High force catch bond mechanism of bacterial adhesion in the human gut.

Authors:  Zhaowei Liu; Haipei Liu; Andrés M Vera; Rafael C Bernardi; Philip Tinnefeld; Michael A Nash
Journal:  Nat Commun       Date:  2020-08-28       Impact factor: 14.919

  8 in total

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