Literature DB >> 25850052

Silence on the relevant literature and errors in implementation.

Philippe Bastiaens1, Marc R Birtwistle2, Nils Blüthgen3, Frank J Bruggeman4, Kwang-Hyun Cho5, Carlo Cosentino6, Alberto de la Fuente7, Jan B Hoek8, Anatoly Kiyatkin9, Steffen Klamt10, Walter Kolch11, Stefan Legewie12, Pedro Mendes13, Takashi Naka14, Tapesh Santra15, Eduardo Sontag16, Hans V Westerhoff17, Boris N Kholodenko11.   

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Year:  2015        PMID： 25850052     DOI： 10.1038/nbt.3185

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  35 in total

1.  From the top down: towards a predictive biology of signalling networks.

Authors:  Jaroslav Stark; Robin Callard; Michael Hubank
Journal:  Trends Biotechnol       Date:  2003-07       Impact factor: 19.536

2.  Discovery of meaningful associations in genomic data using partial correlation coefficients.

Authors:  Alberto de la Fuente; Nan Bing; Ina Hoeschele; Pedro Mendes
Journal:  Bioinformatics       Date:  2004-07-29       Impact factor: 6.937

3.  Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.

Authors:  Boris N Kholodenko; Anatoly Kiyatkin; Frank J Bruggeman; Eduardo Sontag; Hans V Westerhoff; Jan B Hoek
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-19       Impact factor: 11.205

Review 4.  Network motifs: theory and experimental approaches.

Authors:  Uri Alon
Journal:  Nat Rev Genet       Date:  2007-06       Impact factor: 53.242

5.  Quantification of information transfer via cellular signal transduction pathways.

Authors:  B N Kholodenko; J B Hoek; H V Westerhoff; G C Brown
Journal:  FEBS Lett       Date:  1997-09-08       Impact factor: 4.124

6.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

7.  How to infer gene networks from expression profiles.

Authors:  Mukesh Bansal; Vincenzo Belcastro; Alberto Ambesi-Impiombato; Diego di Bernardo
Journal:  Mol Syst Biol       Date:  2007-02-13       Impact factor: 11.429

8.  Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.

Authors:  Tapesh Santra; Walter Kolch; Boris N Kholodenko
Journal:  BMC Syst Biol       Date:  2013-07-06

9.  Network link prediction by global silencing of indirect correlations.

Authors:  Baruch Barzel; Albert-László Barabási
Journal:  Nat Biotechnol       Date:  2013-07-14       Impact factor: 54.908

10.  Network quantification of EGFR signaling unveils potential for targeted combination therapy.

Authors:  Bertram Klinger; Anja Sieber; Raphaela Fritsche-Guenther; Franziska Witzel; Leanne Berry; Dirk Schumacher; Yibing Yan; Pawel Durek; Mark Merchant; Reinhold Schäfer; Christine Sers; Nils Blüthgen
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429
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  7 in total

1.  Response to letter of correspondence - Bastiaens et al.

Authors:  Baruch Barzel; Albert-László Barabási
Journal:  Nat Biotechnol       Date:  2015-04       Impact factor: 54.908

2.  Control of cell state transitions.

Authors:  Melinda Halasz; Nora Rauch; Oleksii S Rukhlenko; Vadim Zhernovkov; Thomas Prince; Kieran Wynne; Stephanie Maher; Eugene Kashdan; Kenneth MacLeod; Neil O Carragher; Walter Kolch; Boris N Kholodenko
Journal:  Nature       Date:  2022-09-14       Impact factor: 69.504

3.  Netter: re-ranking gene network inference predictions using structural network properties.

Authors:  Joeri Ruyssinck; Piet Demeester; Tom Dhaene; Yvan Saeys
Journal:  BMC Bioinformatics       Date:  2016-02-09       Impact factor: 3.169

4.  Experimental noise cutoff boosts inferability of transcriptional networks in large-scale gene-deletion studies.

Authors:  C F Blum; N Heramvand; A S Khonsari; M Kollmann
Journal:  Nat Commun       Date:  2018-01-09       Impact factor: 14.919

5.  Mapping connections in signaling networks with ambiguous modularity.

Authors:  Daniel Lill; Oleksii S Rukhlenko; Anthony James Mc Elwee; Eugene Kashdan; Jens Timmer; Boris N Kholodenko
Journal:  NPJ Syst Biol Appl       Date:  2019-05-23

6.  A systematic analysis of signaling reactivation and drug resistance.

Authors:  Boris N Kholodenko; Nora Rauch; Walter Kolch; Oleksii S Rukhlenko
Journal:  Cell Rep       Date:  2021-05-25       Impact factor: 9.423

7.  Fitting mathematical models of biochemical pathways to steady state perturbation response data without simulating perturbation experiments.

Authors:  Tapesh Santra
Journal:  Sci Rep       Date:  2018-08-03       Impact factor: 4.379
  7 in total

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