Literature DB >> 25844255

Crystal structure of 2-benzamido-N-(2,2-di-eth-oxy-eth-yl)benzamide.

Abdelaaziz Ouahrouch1, Moha Taourirte1, Hassan B Lazrek2, Joachim W Engels3, Michael Bolte4.   

Abstract

In the title compound, C20H24N2O4, both peptide bonds adopt a trans configuration with respect to the -N-H and -C=O groups. The dihedral angle between the aromatic rings is 53.58 (4)°. The mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond. The crystal packing is characterized by zigzag chains of N-H⋯O hydrogen-bonded mol-ecules running along the b-axis direction.

Entities:  

Keywords:  N—H⋯O hydrogen bonds; crystal structure

Year:  2015        PMID: 25844255      PMCID: PMC4350703          DOI: 10.1107/S2056989015003370

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of the title compound, see: Xingwen et al. (2007 ▸); Chandrika et al. (2008 ▸). Compounds with quinazoline scaffolds are of biological importance due to their pharmacological activities such as anti­microbial (Jantova et al., 2004 ▸; Shi et al., 2013 ▸), anti­tumorigenic (Kubo et al., 2005 ▸), anti­fungal (Dandia et al., 2005 ▸), anti­hyperglycemic (Ram et al., 2003 ▸), anti-inflammatory (Gineinah et al., 2002 ▸; Baba et al., 1996 ▸), anti­tumor (Forsch et al., 2002 ▸) and protein kinase inhibitor (Levitzky, 2003 ▸).

Experimental

Crystal data

C20H24N2O4 M = 356.41 Monoclinic, a = 8.4901 (4) Å b = 14.2281 (7) Å c = 15.3864 (7) Å β = 98.659 (4)° V = 1837.46 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.36 × 0.35 × 0.32 mm

Data collection

Stoe IPDS II two-circle diffractometer Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001 ▸) T min = 0.874, T max = 0.892 56243 measured reflections 5148 independent reflections 4676 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 1.08 5148 reflections 244 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.18 e Å−3

Data collection: X-AREA (Stoe & Cie, 2001 ▸); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: XP (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015003370/lh5750sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015003370/lh5750Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015003370/lh5750Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015003370/lh5750fig1.tif A perspective view of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii. Click here for additional data file. . DOI: 10.1107/S2056989015003370/lh5750fig2.tif Crystal packing of the title compound. Hydrogen atoms bonded to C are omitted for clarity. Hydrogen bonds are shown as dashed lines. CCDC reference: 1050003 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H24N2O4F(000) = 760
Mr = 356.41Dx = 1.288 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.4901 (4) ÅCell parameters from 59538 reflections
b = 14.2281 (7) Åθ = 3.6–29.9°
c = 15.3864 (7) ŵ = 0.09 mm1
β = 98.659 (4)°T = 173 K
V = 1837.46 (15) Å3Block, colourless
Z = 40.36 × 0.35 × 0.32 mm
Stoe IPDS II two-circle diffractometer4676 reflections with I > 2σ(I)
Radiation source: Genix 3D IµS microfocus X-ray sourceRint = 0.065
ω scansθmax = 29.7°, θmin = 3.6°
Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001)h = −11→10
Tmin = 0.874, Tmax = 0.892k = −19→19
56243 measured reflectionsl = −21→21
5148 independent reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.041w = 1/[σ2(Fo2) + (0.0525P)2 + 0.4445P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.110(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.35 e Å3
5148 reflectionsΔρmin = −0.17 e Å3
244 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.020 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
N10.62897 (11)0.11518 (6)0.37268 (6)0.02663 (18)
H10.6531 (19)0.1522 (11)0.4190 (10)0.039 (4)*
N20.73335 (10)0.39881 (6)0.34983 (5)0.02395 (17)
H20.7336 (17)0.4150 (10)0.2968 (10)0.031 (3)*
O10.67588 (12)−0.02751 (6)0.31368 (5)0.0385 (2)
O20.69514 (10)0.28243 (5)0.44371 (5)0.02974 (17)
O30.80069 (8)0.55548 (5)0.53889 (5)0.02611 (16)
O40.59596 (8)0.56951 (5)0.41902 (5)0.02602 (16)
C10.67865 (13)0.02429 (7)0.37787 (7)0.0271 (2)
C20.67557 (11)0.31442 (7)0.36759 (6)0.02229 (18)
C30.81688 (11)0.45736 (7)0.41942 (6)0.02321 (18)
H3A0.88220.50430.39340.028*
H3B0.88980.41760.46020.028*
C40.70242 (11)0.50823 (7)0.47073 (6)0.02223 (18)
H40.63870.46010.49760.027*
C50.71605 (13)0.59880 (9)0.60186 (8)0.0347 (2)
H5A0.66150.55040.63270.042*
H5B0.63470.64260.57210.042*
C60.83490 (14)0.65147 (8)0.66656 (7)0.0330 (2)
H6A0.77970.68190.71050.049*
H6B0.91460.60750.69580.049*
H6C0.88780.69930.63540.049*
C70.66672 (14)0.64600 (9)0.37833 (9)0.0375 (3)
H7A0.69540.62570.32120.045*
H7B0.76490.66710.41640.045*
C80.54856 (18)0.72486 (10)0.36468 (11)0.0473 (3)
H8A0.59500.77790.33680.071*
H8B0.45210.70350.32670.071*
H8C0.52130.74470.42160.071*
C110.74040 (13)−0.00903 (7)0.46888 (7)0.0277 (2)
C120.84330 (16)−0.08571 (8)0.47741 (9)0.0391 (3)
H120.8685−0.11640.42640.047*
C130.90937 (19)−0.11757 (10)0.56026 (10)0.0493 (3)
H130.9823−0.16860.56580.059*
C140.86936 (19)−0.07526 (11)0.63444 (9)0.0509 (4)
H140.9139−0.09750.69100.061*
C150.76431 (18)−0.00032 (10)0.62657 (8)0.0425 (3)
H150.73610.02830.67790.051*
C160.69998 (14)0.03331 (8)0.54417 (7)0.0319 (2)
H160.62850.08510.53910.038*
C210.56160 (11)0.16374 (7)0.29641 (6)0.02321 (18)
C220.58342 (11)0.26171 (7)0.29212 (6)0.02224 (18)
C230.51100 (13)0.30950 (7)0.21728 (7)0.0273 (2)
H230.52450.37560.21360.033*
C240.41991 (13)0.26268 (8)0.14820 (7)0.0301 (2)
H240.37240.29630.09760.036*
C250.39886 (12)0.16645 (8)0.15357 (7)0.0291 (2)
H250.33590.13410.10670.035*
C260.46886 (13)0.11722 (7)0.22676 (7)0.0274 (2)
H260.45380.05120.22970.033*
U11U22U33U12U13U23
N10.0370 (5)0.0208 (4)0.0209 (4)−0.0003 (3)0.0005 (3)−0.0013 (3)
N20.0285 (4)0.0242 (4)0.0187 (4)−0.0022 (3)0.0021 (3)−0.0009 (3)
O10.0569 (5)0.0297 (4)0.0287 (4)0.0088 (4)0.0053 (4)−0.0057 (3)
O20.0428 (4)0.0251 (3)0.0196 (3)−0.0033 (3)−0.0007 (3)0.0001 (3)
O30.0214 (3)0.0309 (4)0.0254 (3)−0.0009 (3)0.0015 (3)−0.0082 (3)
O40.0204 (3)0.0267 (3)0.0302 (4)0.0001 (3)0.0013 (3)0.0035 (3)
C10.0332 (5)0.0230 (4)0.0253 (4)−0.0003 (4)0.0053 (4)−0.0003 (3)
C20.0241 (4)0.0217 (4)0.0204 (4)0.0022 (3)0.0013 (3)−0.0020 (3)
C30.0213 (4)0.0237 (4)0.0241 (4)−0.0017 (3)0.0018 (3)−0.0034 (3)
C40.0206 (4)0.0228 (4)0.0227 (4)−0.0014 (3)0.0015 (3)−0.0015 (3)
C50.0279 (5)0.0443 (6)0.0321 (5)−0.0004 (4)0.0054 (4)−0.0143 (5)
C60.0389 (6)0.0293 (5)0.0308 (5)−0.0042 (4)0.0051 (4)−0.0078 (4)
C70.0303 (5)0.0354 (6)0.0472 (7)0.0008 (4)0.0070 (5)0.0155 (5)
C80.0459 (7)0.0348 (6)0.0597 (8)0.0072 (5)0.0027 (6)0.0140 (6)
C110.0333 (5)0.0225 (4)0.0268 (5)−0.0040 (4)0.0035 (4)0.0026 (3)
C120.0471 (7)0.0298 (5)0.0412 (6)0.0055 (5)0.0093 (5)0.0092 (5)
C130.0513 (8)0.0415 (7)0.0539 (8)0.0059 (6)0.0043 (6)0.0229 (6)
C140.0593 (8)0.0510 (8)0.0384 (7)−0.0101 (6)−0.0055 (6)0.0217 (6)
C150.0573 (8)0.0435 (6)0.0262 (5)−0.0135 (6)0.0042 (5)0.0042 (5)
C160.0392 (6)0.0288 (5)0.0277 (5)−0.0065 (4)0.0048 (4)−0.0001 (4)
C210.0257 (4)0.0237 (4)0.0204 (4)0.0009 (3)0.0039 (3)−0.0019 (3)
C220.0238 (4)0.0228 (4)0.0197 (4)0.0009 (3)0.0021 (3)−0.0021 (3)
C230.0311 (5)0.0251 (4)0.0240 (4)0.0007 (4)−0.0014 (4)0.0003 (3)
C240.0307 (5)0.0343 (5)0.0231 (4)0.0019 (4)−0.0032 (4)0.0002 (4)
C250.0271 (5)0.0353 (5)0.0238 (4)−0.0023 (4)0.0003 (4)−0.0070 (4)
C260.0310 (5)0.0254 (4)0.0256 (4)−0.0037 (4)0.0034 (4)−0.0051 (4)
N1—C11.3589 (13)C7—H7B0.9900
N1—C211.4069 (12)C8—H8A0.9800
N1—H10.886 (16)C8—H8B0.9800
N2—C21.3406 (12)C8—H8C0.9800
N2—C31.4542 (12)C11—C121.3915 (16)
N2—H20.848 (15)C11—C161.3937 (15)
O1—C11.2296 (13)C12—C131.3892 (18)
O2—C21.2441 (11)C12—H120.9500
O3—C41.4088 (11)C13—C141.377 (2)
O3—C51.4299 (13)C13—H130.9500
O4—C41.4120 (11)C14—C151.384 (2)
O4—C71.4319 (13)C14—H140.9500
C1—C111.4965 (14)C15—C161.3878 (16)
C2—C221.4998 (12)C15—H150.9500
C3—C41.5240 (13)C16—H160.9500
C3—H3A0.9900C21—C261.3973 (13)
C3—H3B0.9900C21—C221.4091 (13)
C4—H41.0000C22—C231.3976 (13)
C5—C61.5061 (15)C23—C241.3871 (14)
C5—H5A0.9900C23—H230.9500
C5—H5B0.9900C24—C251.3850 (16)
C6—H6A0.9800C24—H240.9500
C6—H6B0.9800C25—C261.3821 (15)
C6—H6C0.9800C25—H250.9500
C7—C81.4987 (17)C26—H260.9500
C7—H7A0.9900
C1—N1—C21126.87 (8)H7A—C7—H7B108.4
C1—N1—H1119.1 (10)C7—C8—H8A109.5
C21—N1—H1113.3 (10)C7—C8—H8B109.5
C2—N2—C3121.06 (8)H8A—C8—H8B109.5
C2—N2—H2119.5 (10)C7—C8—H8C109.5
C3—N2—H2118.8 (10)H8A—C8—H8C109.5
C4—O3—C5114.11 (7)H8B—C8—H8C109.5
C4—O4—C7116.14 (8)C12—C11—C16119.35 (10)
O1—C1—N1123.70 (10)C12—C11—C1117.59 (10)
O1—C1—C11121.56 (9)C16—C11—C1123.06 (10)
N1—C1—C11114.73 (9)C13—C12—C11120.23 (13)
O2—C2—N2121.22 (9)C13—C12—H12119.9
O2—C2—C22121.74 (9)C11—C12—H12119.9
N2—C2—C22117.02 (8)C14—C13—C12120.12 (13)
N2—C3—C4112.03 (8)C14—C13—H13119.9
N2—C3—H3A109.2C12—C13—H13119.9
C4—C3—H3A109.2C13—C14—C15120.03 (12)
N2—C3—H3B109.2C13—C14—H14120.0
C4—C3—H3B109.2C15—C14—H14120.0
H3A—C3—H3B107.9C14—C15—C16120.36 (13)
O3—C4—O4112.45 (8)C14—C15—H15119.8
O3—C4—C3105.07 (7)C16—C15—H15119.8
O4—C4—C3113.91 (8)C15—C16—C11119.87 (12)
O3—C4—H4108.4C15—C16—H16120.1
O4—C4—H4108.4C11—C16—H16120.1
C3—C4—H4108.4C26—C21—N1121.23 (9)
O3—C5—C6107.89 (9)C26—C21—C22119.70 (9)
O3—C5—H5A110.1N1—C21—C22119.02 (8)
C6—C5—H5A110.1C23—C22—C21118.38 (9)
O3—C5—H5B110.1C23—C22—C2120.54 (8)
C6—C5—H5B110.1C21—C22—C2121.02 (8)
H5A—C5—H5B108.4C24—C23—C22121.54 (9)
C5—C6—H6A109.5C24—C23—H23119.2
C5—C6—H6B109.5C22—C23—H23119.2
H6A—C6—H6B109.5C25—C24—C23119.41 (9)
C5—C6—H6C109.5C25—C24—H24120.3
H6A—C6—H6C109.5C23—C24—H24120.3
H6B—C6—H6C109.5C26—C25—C24120.41 (9)
O4—C7—C8108.32 (10)C26—C25—H25119.8
O4—C7—H7A110.0C24—C25—H25119.8
C8—C7—H7A110.0C25—C26—C21120.56 (9)
O4—C7—H7B110.0C25—C26—H26119.7
C8—C7—H7B110.0C21—C26—H26119.7
C21—N1—C1—O12.80 (18)C13—C14—C15—C16−0.7 (2)
C21—N1—C1—C11−177.98 (9)C14—C15—C16—C110.47 (19)
C3—N2—C2—O2−1.91 (14)C12—C11—C16—C150.99 (17)
C3—N2—C2—C22176.69 (8)C1—C11—C16—C15−178.76 (11)
C2—N2—C3—C4−78.73 (11)C1—N1—C21—C2631.59 (16)
C5—O3—C4—O462.87 (11)C1—N1—C21—C22−150.91 (10)
C5—O3—C4—C3−172.70 (9)C26—C21—C22—C23−0.19 (14)
C7—O4—C4—O357.49 (11)N1—C21—C22—C23−177.73 (9)
C7—O4—C4—C3−61.91 (11)C26—C21—C22—C2176.98 (9)
N2—C3—C4—O3175.66 (8)N1—C21—C22—C2−0.56 (14)
N2—C3—C4—O4−60.83 (10)O2—C2—C22—C23155.43 (10)
C4—O3—C5—C6−176.28 (9)N2—C2—C22—C23−23.16 (13)
C4—O4—C7—C8−153.25 (10)O2—C2—C22—C21−21.68 (14)
O1—C1—C11—C1221.90 (16)N2—C2—C22—C21159.73 (9)
N1—C1—C11—C12−157.34 (10)C21—C22—C23—C24−0.21 (15)
O1—C1—C11—C16−158.35 (11)C2—C22—C23—C24−177.39 (10)
N1—C1—C11—C1622.41 (15)C22—C23—C24—C250.54 (16)
C16—C11—C12—C13−2.25 (18)C23—C24—C25—C26−0.49 (17)
C1—C11—C12—C13177.51 (12)C24—C25—C26—C210.10 (16)
C11—C12—C13—C142.1 (2)N1—C21—C26—C25177.72 (10)
C12—C13—C14—C15−0.6 (2)C22—C21—C26—C250.24 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.886 (16)1.914 (15)2.6434 (11)138.6 (14)
N2—H2···O1i0.848 (15)2.132 (15)2.9338 (12)157.6 (13)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1O20.886(16)1.914(15)2.6434(11)138.6(14)
N2H2O1i 0.848(15)2.132(15)2.9338(12)157.6(13)

Symmetry code: (i) .

  10 in total

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Authors:  P Mani Chandrika; T Yakaiah; A Raghu Ram Rao; B Narsaiah; N Chakra Reddy; V Sridhar; J Venkateshwara Rao
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Review 8.  Protein kinase inhibitors as a therapeutic modality.

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