Literature DB >> 25844223

Crystal structure of 3-[2-(thio-phen-3-yl)ethyn-yl]-2H-chromen-2-one.

Ignez Caracelli1, Stella H Maganhi1, Hélio A Stefani2, Karina Gueogjian2, Edward R T Tiekink3.   

Abstract

In the title compound, C15H8O2S, the coumarin moiety is approximately planar (r.m.s. deviation of the 11 non-H atoms = 0.025 Å) and is slightly inclined with respect to the plane of the thio-phen-3-yl ring, forming a dihedral angle of 11.75 (8)°. In the crystal, the three-dimensional architecture features a combination of coumarin-thio-phene C-H⋯π and π-π [inter-centroid distance = 3.6612 (12) Å] inter-actions.

Entities:  

Keywords:  C—H⋯π inter­actions; asymmetric alkyne; coumarin; crystal structure; π–π inter­actions

Year:  2015        PMID: 25844223      PMCID: PMC4350713          DOI: 10.1107/S2056989015002157

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the wide range of different biological activities of coumarins, see: Wu et al. (2009 ▸); Roussaki et al. (2014 ▸). For background to our ongoing inter­est in the synthesis and crystal structures of coumarin derivatives, see: Stefani et al. (2012 ▸); Caracelli et al. (2015 ▸). For the synthesis of the title compound, see: Gueogjian (2011 ▸).

Experimental

Crystal data

C15H8O2S M = 252.27 Monoclinic, a = 10.7726 (6) Å b = 9.7572 (3) Å c = 12.2084 (5) Å β = 115.547 (6)° V = 1157.77 (11) Å3 Z = 4 Cu Kα radiation μ = 2.40 mm−1 T = 100 K 0.25 × 0.15 × 0.05 mm

Data collection

Agilent CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▸) T min = 0.338, T max = 1.000 4511 measured reflections 2373 independent reflections 2108 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.156 S = 1.06 2373 reflections 163 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.57 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2014 (Burla et al., 2015 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015002157/su5073sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015002157/su5073Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015002157/su5073Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015002157/su5073fig1.tif Mol­ecular structure of the title compound showing atom labelling and displacement ellipsoids at the 70% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015002157/su5073fig2.tif A view in projection down the b axis of the unit-cell contents. The π–π and C—H⋯π inter­actions are shown as purple and orange dashed lines, respectively. CCDC reference: 1046686 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H8O2SF(000) = 520
Mr = 252.27Dx = 1.447 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 10.7726 (6) ÅCell parameters from 2362 reflections
b = 9.7572 (3) Åθ = 4.0–76.0°
c = 12.2084 (5) ŵ = 2.40 mm1
β = 115.547 (6)°T = 100 K
V = 1157.77 (11) Å3Prism, dark yellow
Z = 40.25 × 0.15 × 0.05 mm
Agilent CCD diffractometer2108 reflections with I > 2σ(I)
Radiation source: SuperNova (Cu) X-ray SourceRint = 0.023
ω scansθmax = 76.2°, θmin = 4.6°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −13→11
Tmin = 0.338, Tmax = 1.000k = −12→10
4511 measured reflectionsl = −15→14
2373 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.156w = 1/[σ2(Fo2) + (0.1031P)2 + 0.5663P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2373 reflectionsΔρmax = 0.42 e Å3
163 parametersΔρmin = −0.57 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S11.08150 (6)0.79946 (6)0.56811 (5)0.0338 (2)
O10.47823 (14)0.23152 (14)0.60599 (12)0.0194 (3)
O20.62583 (14)0.39103 (15)0.71228 (12)0.0236 (3)
C11.0505 (2)0.80962 (19)0.69506 (19)0.0225 (4)
H11.09760.86840.76240.027*
C20.9466 (2)0.7191 (2)0.68413 (19)0.0236 (4)
H20.91430.70810.74480.028*
C30.8928 (2)0.64361 (19)0.57262 (18)0.0204 (4)
C40.9581 (2)0.6785 (2)0.50099 (19)0.0274 (5)
H40.93680.63960.42360.033*
C50.7859 (2)0.5442 (2)0.54250 (17)0.0207 (4)
C60.69803 (19)0.4614 (2)0.52352 (16)0.0198 (4)
C110.57073 (19)0.3326 (2)0.61608 (17)0.0186 (4)
C70.59579 (19)0.35987 (19)0.50841 (17)0.0183 (4)
C80.5239 (2)0.29061 (19)0.40315 (18)0.0194 (4)
H80.53800.31150.33340.023*
C90.4272 (2)0.18649 (19)0.39642 (18)0.0183 (4)
C150.3539 (2)0.1072 (2)0.29190 (17)0.0211 (4)
H150.36420.12490.21980.025*
C140.2672 (2)0.00402 (19)0.29346 (18)0.0216 (4)
H140.2187−0.04970.22290.026*
C130.2510 (2)−0.0214 (2)0.39989 (18)0.0224 (4)
H130.1905−0.09200.40040.027*
C120.3219 (2)0.0550 (2)0.50393 (18)0.0218 (4)
H120.31140.03710.57590.026*
C100.40856 (19)0.1581 (2)0.50072 (17)0.0185 (4)
U11U22U33U12U13U23
S10.0356 (4)0.0357 (4)0.0303 (4)−0.0118 (2)0.0144 (3)0.0005 (2)
O10.0231 (7)0.0234 (7)0.0148 (6)−0.0009 (5)0.0109 (5)0.0002 (5)
O20.0262 (7)0.0299 (8)0.0159 (7)−0.0019 (6)0.0102 (6)−0.0023 (6)
C10.0212 (9)0.0219 (9)0.0222 (10)0.0033 (7)0.0072 (8)−0.0011 (7)
C20.0254 (10)0.0257 (9)0.0209 (10)0.0022 (8)0.0112 (8)−0.0019 (7)
C30.0221 (9)0.0205 (9)0.0182 (9)0.0010 (7)0.0082 (7)0.0021 (7)
C40.0334 (11)0.0304 (10)0.0194 (10)−0.0080 (9)0.0122 (9)−0.0008 (8)
C50.0244 (9)0.0241 (9)0.0154 (8)0.0034 (8)0.0104 (7)0.0018 (7)
C60.0246 (10)0.0218 (9)0.0142 (8)0.0040 (7)0.0096 (7)0.0005 (7)
C110.0211 (9)0.0202 (9)0.0159 (9)0.0030 (7)0.0092 (7)0.0009 (7)
C70.0208 (9)0.0197 (9)0.0164 (9)0.0016 (7)0.0099 (7)0.0016 (7)
C80.0228 (9)0.0226 (9)0.0160 (9)0.0000 (7)0.0113 (8)0.0006 (7)
C90.0207 (9)0.0183 (8)0.0174 (9)0.0011 (7)0.0098 (7)0.0002 (7)
C150.0245 (9)0.0255 (9)0.0146 (8)0.0006 (7)0.0097 (7)−0.0003 (7)
C140.0238 (9)0.0213 (9)0.0194 (9)0.0002 (7)0.0092 (7)−0.0020 (7)
C130.0227 (9)0.0230 (9)0.0224 (10)−0.0020 (7)0.0105 (8)0.0014 (7)
C120.0255 (10)0.0235 (9)0.0198 (9)0.0026 (8)0.0130 (8)0.0048 (7)
C100.0210 (9)0.0200 (9)0.0148 (9)0.0019 (7)0.0081 (7)−0.0008 (7)
S1—C41.701 (2)C11—C71.476 (3)
S1—C11.723 (2)C7—C81.360 (3)
O1—C111.369 (2)C8—C91.432 (3)
O1—C101.377 (2)C8—H80.9500
O2—C111.206 (2)C9—C101.400 (3)
C1—C21.387 (3)C9—C151.408 (3)
C1—H10.9500C15—C141.378 (3)
C2—C31.432 (3)C15—H150.9500
C2—H20.9500C14—C131.406 (3)
C3—C41.381 (3)C14—H140.9500
C3—C51.426 (3)C13—C121.384 (3)
C4—H40.9500C13—H130.9500
C5—C61.189 (3)C12—C101.384 (3)
C6—C71.433 (3)C12—H120.9500
C4—S1—C193.39 (10)C7—C8—C9120.69 (18)
C11—O1—C10122.76 (15)C7—C8—H8119.7
C2—C1—S1109.76 (15)C9—C8—H8119.7
C2—C1—H1125.1C10—C9—C15118.13 (18)
S1—C1—H1125.1C10—C9—C8118.32 (18)
C1—C2—C3113.49 (19)C15—C9—C8123.50 (18)
C1—C2—H2123.3C14—C15—C9120.50 (17)
C3—C2—H2123.3C14—C15—H15119.8
C4—C3—C5125.39 (18)C9—C15—H15119.8
C4—C3—C2111.53 (18)C15—C14—C13119.78 (18)
C5—C3—C2123.08 (18)C15—C14—H14120.1
C3—C4—S1111.83 (16)C13—C14—H14120.1
C3—C4—H4124.1C12—C13—C14120.90 (18)
S1—C4—H4124.1C12—C13—H13119.6
C6—C5—C3176.60 (19)C14—C13—H13119.6
C5—C6—C7176.52 (19)C13—C12—C10118.53 (17)
O2—C11—O1117.48 (17)C13—C12—H12120.7
O2—C11—C7125.43 (18)C10—C12—H12120.7
O1—C11—C7117.09 (16)O1—C10—C12117.02 (16)
C8—C7—C6123.92 (17)O1—C10—C9120.80 (17)
C8—C7—C11120.25 (17)C12—C10—C9122.17 (18)
C6—C7—C11115.83 (16)
C4—S1—C1—C20.47 (17)C7—C8—C9—C100.1 (3)
S1—C1—C2—C3−0.5 (2)C7—C8—C9—C15−177.24 (18)
C1—C2—C3—C40.3 (3)C10—C9—C15—C14−0.5 (3)
C1—C2—C3—C5179.59 (18)C8—C9—C15—C14176.84 (18)
C5—C3—C4—S1−179.21 (16)C9—C15—C14—C130.6 (3)
C2—C3—C4—S10.1 (2)C15—C14—C13—C12−0.6 (3)
C1—S1—C4—C3−0.30 (18)C14—C13—C12—C100.5 (3)
C10—O1—C11—O2179.74 (16)C11—O1—C10—C12177.52 (16)
C10—O1—C11—C7−0.9 (3)C11—O1—C10—C9−1.6 (3)
O2—C11—C7—C8−177.71 (19)C13—C12—C10—O1−179.57 (16)
O1—C11—C7—C83.0 (3)C13—C12—C10—C9−0.5 (3)
O2—C11—C7—C62.3 (3)C15—C9—C10—O1179.50 (16)
O1—C11—C7—C6−177.02 (15)C8—C9—C10—O12.0 (3)
C6—C7—C8—C9177.45 (17)C15—C9—C10—C120.5 (3)
C11—C7—C8—C9−2.6 (3)C8—C9—C10—C12−177.01 (17)
D—H···AD—HH···AD···AD—H···A
C14—H14···Cg1i0.952.893.701 (2)144
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of ring S1,C1C4.

DHA DHHA D A DHA
C14H14Cg1i 0.952.893.701(2)144

Symmetry code: (i) .

  4 in total

1.  Structural modifications of coumarin derivatives: Determination of antioxidant and lipoxygenase (LOX) inhibitory activity.

Authors:  Marina Roussaki; Konstantinos Zelianaios; Eleni Kavetsou; Stylianos Hamilakis; Dimitra Hadjipavlou-Litina; Christos Kontogiorgis; Thalia Liargkova; Anastasia Detsi
Journal:  Bioorg Med Chem       Date:  2014-12-01       Impact factor: 3.641

Review 2.  The structure and pharmacological functions of coumarins and their derivatives.

Authors:  Longhuo Wu; Xiao Wang; William Xu; Farzin Farzaneh; Ruian Xu
Journal:  Curr Med Chem       Date:  2009       Impact factor: 4.530

3.  Synthesis, biological evaluation and molecular docking studies of 3-(triazolyl)-coumarin derivatives: effect on inducible nitric oxide synthase.

Authors:  Hélio A Stefani; Karina Gueogjan; Flávia Manarin; Sandra H P Farsky; Julio Zukerman-Schpector; Ignez Caracelli; Sergio R Pizano Rodrigues; Marcelo N Muscará; Simone A Teixeira; José R Santin; Isabel D Machado; Simone M Bolonheis; Rui Curi; Marco A Vinolo
Journal:  Eur J Med Chem       Date:  2012-10-17       Impact factor: 6.514

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total

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