Literature DB >> 25844216

Crystal structure of ethyl 1',1''-dimethyl-2'',3-dioxo-3H-di-spiro-[benzo[b]thio-phene-2,3'-pyrrolidine-2',3''-indoline]-4'-carboxyl-ate.

M P Savithri1, M Suresh2, R Raghunathan2, R Raja3, A SubbiahPandi3.   

Abstract

In the title compound, C23H22N2O4S, the pyrrolidine ring has an envelope conformation with the spiro C atom, shared with the indoline ring system, as the flap. The mean planes of the benzo-thio-phene and indoline ring systems are inclined to the mean plane of the pyrrolidine ring by 88.81 (8) and 79.48 (8)°, respectively, and to each other by 68.12 (5)°. In the crystal, mol-ecules are linked via C-H⋯O hydrogen bonds, forming chains propagating along [001].

Entities:  

Keywords:  C—H⋯O hydrogen bonds.; benzo­thio­phene; crystal structure; di­spiro; indole; pyrrolidine

Year:  2015        PMID: 25844216      PMCID: PMC4350758          DOI: 10.1107/S2056989015002042

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For various biological activities of indole derivatives, see: Harris & Uhle (1960 ▸); Ho et al. (1986 ▸); Stevenson et al. (2000 ▸). For the crystal structures of two very similar compounds, see: Savithri et al. (2014 ▸).

Experimental

Crystal data

C23H22N2O4S M = 422.49 Monoclinic, a = 23.7049 (11) Å b = 8.2632 (3) Å c = 22.1003 (8) Å β = 102.337 (2)° V = 4229.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.19 mm−1 T = 293 K 0.35 × 0.30 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.896, T max = 0.910 22087 measured reflections 4621 independent reflections 3869 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.03 4618 reflections 275 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015002042/su5065sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015002042/su5065Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015002042/su5065fig1.tif The mol­ecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015002042/su5065fig2.tif The crystal packing of the title compound viewed along the b axis. Dashed lines shows the inter­molecular C—H⋯O hydrogen bonds. H atoms not involved in hydrogen bonding have been omitted for clarity. CCDC reference: 1046459 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H22N2O4SF(000) = 1776
Mr = 422.49Dx = 1.327 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4634 reflections
a = 23.7049 (11) Åθ = 2.3–27.0°
b = 8.2632 (3) ŵ = 0.19 mm1
c = 22.1003 (8) ÅT = 293 K
β = 102.337 (2)°Block, colourless
V = 4229.0 (3) Å30.35 × 0.30 × 0.30 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer4621 independent reflections
Radiation source: fine-focus sealed tube3869 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
ω and φ scansθmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −30→30
Tmin = 0.896, Tmax = 0.910k = −10→8
22087 measured reflectionsl = −22→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.0502P)2 + 2.8328P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4618 reflectionsΔρmax = 0.40 e Å3
275 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0025 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.141873 (15)0.31779 (4)0.413751 (16)0.03357 (12)
C110.13418 (6)0.09712 (17)0.41066 (6)0.0316 (3)
N10.16154 (6)−0.18548 (15)0.30761 (6)0.0390 (3)
C10.18787 (6)0.08191 (18)0.32013 (6)0.0319 (3)
O20.05531 (5)−0.07835 (14)0.36475 (6)0.0499 (3)
O10.17197 (6)−0.27090 (14)0.40812 (6)0.0515 (3)
C80.18360 (6)0.02047 (17)0.38341 (6)0.0318 (3)
C120.07265 (6)0.05908 (19)0.37426 (7)0.0350 (3)
C140.07062 (6)0.34826 (19)0.37340 (7)0.0352 (3)
C70.17122 (6)−0.16405 (18)0.37017 (7)0.0364 (3)
N20.23289 (5)0.05295 (16)0.43401 (6)0.0384 (3)
C130.03980 (6)0.2070 (2)0.35486 (7)0.0380 (3)
C60.17075 (6)−0.04172 (19)0.27721 (7)0.0356 (3)
C20.20526 (7)0.2287 (2)0.30060 (8)0.0395 (4)
H20.21870.31050.32900.047*
O40.06476 (6)0.13849 (16)0.49836 (6)0.0556 (3)
C100.14909 (7)0.0263 (2)0.47706 (7)0.0405 (4)
H100.1360−0.08650.47470.049*
C90.21520 (8)0.0253 (2)0.49324 (8)0.0495 (4)
H9A0.22980.11040.52260.059*
H9B0.2296−0.07800.51100.059*
C150.04484 (7)0.4995 (2)0.36049 (8)0.0471 (4)
H150.06540.59420.37260.056*
C200.28698 (7)−0.0239 (2)0.42869 (9)0.0541 (5)
H20A0.2826−0.13940.42900.081*
H20B0.31700.00830.46300.081*
H20C0.29690.00880.39060.081*
C18−0.01766 (8)0.2148 (2)0.32301 (9)0.0539 (5)
H18−0.03840.12060.31050.065*
C210.12051 (9)0.1125 (2)0.52268 (7)0.0498 (4)
C50.16713 (7)−0.0205 (2)0.21453 (7)0.0474 (4)
H50.1547−0.10320.18630.057*
C30.20234 (8)0.2522 (2)0.23745 (8)0.0489 (4)
H30.21360.35080.22360.059*
O30.14426 (8)0.1504 (2)0.57445 (6)0.0794 (5)
C40.18291 (8)0.1304 (3)0.19547 (8)0.0530 (5)
H40.18030.14950.15350.064*
C190.15024 (10)−0.3419 (2)0.27783 (10)0.0598 (5)
H19A0.1551−0.42520.30880.090*
H19B0.1767−0.35960.25110.090*
H19C0.1114−0.34450.25380.090*
C16−0.01201 (9)0.5045 (3)0.32919 (11)0.0646 (5)
H16−0.03000.60430.32040.078*
C17−0.04313 (8)0.3642 (3)0.31035 (11)0.0686 (6)
H17−0.08140.37130.28910.082*
C220.03086 (12)0.2257 (3)0.53552 (11)0.0763 (7)
H22A0.05190.32010.55440.092*
H22B0.02300.15650.56820.092*
C23−0.02388 (11)0.2757 (3)0.49378 (13)0.0819 (7)
H23A−0.01560.34580.46210.123*
H23B−0.04750.33200.51720.123*
H23C−0.04400.18150.47490.123*
U11U22U33U12U13U23
S10.0366 (2)0.0301 (2)0.03283 (19)−0.00394 (14)0.00468 (14)−0.00350 (15)
C110.0373 (7)0.0291 (7)0.0280 (6)−0.0048 (6)0.0063 (5)−0.0004 (6)
N10.0449 (7)0.0305 (7)0.0405 (7)−0.0051 (5)0.0066 (5)−0.0084 (6)
C10.0295 (7)0.0325 (8)0.0336 (7)0.0001 (5)0.0066 (5)−0.0022 (6)
O20.0461 (6)0.0378 (7)0.0646 (8)−0.0129 (5)0.0090 (6)−0.0061 (6)
O10.0686 (8)0.0314 (6)0.0514 (7)−0.0028 (5)0.0059 (6)0.0072 (6)
C80.0346 (7)0.0279 (7)0.0309 (7)−0.0026 (6)0.0028 (5)−0.0017 (6)
C120.0363 (7)0.0380 (8)0.0319 (7)−0.0083 (6)0.0103 (6)−0.0018 (6)
C140.0354 (7)0.0394 (8)0.0314 (7)−0.0017 (6)0.0087 (6)0.0023 (6)
C70.0374 (8)0.0297 (8)0.0402 (8)−0.0012 (6)0.0042 (6)−0.0028 (7)
N20.0368 (7)0.0393 (7)0.0344 (6)−0.0001 (5)−0.0027 (5)−0.0052 (6)
C130.0351 (7)0.0424 (9)0.0363 (8)−0.0039 (6)0.0074 (6)0.0016 (7)
C60.0324 (7)0.0380 (8)0.0357 (7)−0.0004 (6)0.0056 (6)−0.0049 (6)
C20.0405 (8)0.0361 (8)0.0447 (9)−0.0032 (6)0.0153 (7)−0.0022 (7)
O40.0676 (8)0.0583 (8)0.0484 (7)−0.0018 (6)0.0292 (6)−0.0051 (6)
C100.0561 (9)0.0360 (8)0.0286 (7)−0.0033 (7)0.0071 (6)0.0036 (6)
C90.0574 (10)0.0516 (10)0.0339 (8)0.0029 (8)−0.0028 (7)0.0021 (8)
C150.0486 (9)0.0402 (9)0.0527 (10)0.0024 (7)0.0116 (8)0.0048 (8)
C200.0412 (9)0.0573 (11)0.0574 (11)0.0070 (8)−0.0038 (8)−0.0107 (9)
C180.0388 (9)0.0560 (11)0.0624 (11)−0.0086 (8)0.0010 (8)0.0020 (9)
C210.0757 (12)0.0444 (10)0.0326 (8)−0.0061 (9)0.0187 (8)0.0056 (7)
C50.0516 (9)0.0556 (11)0.0341 (8)0.0001 (8)0.0075 (7)−0.0095 (8)
C30.0518 (10)0.0489 (10)0.0511 (10)0.0011 (8)0.0223 (8)0.0104 (8)
O30.1083 (13)0.0999 (13)0.0299 (6)0.0017 (10)0.0146 (7)−0.0060 (7)
C40.0585 (11)0.0672 (12)0.0359 (8)0.0068 (9)0.0160 (7)0.0067 (9)
C190.0756 (13)0.0414 (10)0.0633 (12)−0.0176 (9)0.0168 (10)−0.0216 (9)
C160.0524 (11)0.0571 (12)0.0803 (14)0.0142 (9)0.0051 (10)0.0150 (11)
C170.0396 (9)0.0744 (14)0.0835 (15)0.0060 (10)−0.0054 (9)0.0138 (12)
C220.1001 (18)0.0769 (16)0.0680 (14)0.0025 (13)0.0542 (14)−0.0079 (12)
C230.0883 (17)0.0679 (15)0.106 (2)0.0066 (13)0.0587 (16)−0.0015 (14)
S1—C141.7516 (15)C10—H100.9800
S1—C111.8324 (15)C9—H9A0.9700
C11—C121.540 (2)C9—H9B0.9700
C11—C101.5487 (19)C15—C161.378 (3)
C11—C81.561 (2)C15—H150.9300
N1—C71.364 (2)C20—H20A0.9600
N1—C61.405 (2)C20—H20B0.9600
N1—C191.449 (2)C20—H20C0.9600
C1—C21.380 (2)C18—C171.377 (3)
C1—C61.394 (2)C18—H180.9300
C1—C81.511 (2)C21—O31.204 (2)
O2—C121.2107 (18)C5—C41.393 (3)
O1—C71.2153 (19)C5—H50.9300
C8—N21.4592 (18)C3—C41.379 (3)
C8—C71.568 (2)C3—H30.9300
C12—C131.464 (2)C4—H40.9300
C14—C131.391 (2)C19—H19A0.9600
C14—C151.394 (2)C19—H19B0.9600
N2—C201.458 (2)C19—H19C0.9600
N2—C91.475 (2)C16—C171.389 (3)
C13—C181.395 (2)C16—H160.9300
C6—C51.381 (2)C17—H170.9300
C2—C31.396 (2)C22—C231.481 (4)
C2—H20.9300C22—H22A0.9700
O4—C211.333 (2)C22—H22B0.9700
O4—C221.457 (2)C23—H23A0.9600
C10—C211.508 (2)C23—H23B0.9600
C10—C91.531 (2)C23—H23C0.9600
C14—S1—C1192.67 (7)C10—C9—H9B110.7
C12—C11—C10114.63 (12)H9A—C9—H9B108.8
C12—C11—C8114.87 (11)C16—C15—C14117.94 (17)
C10—C11—C8100.04 (11)C16—C15—H15121.0
C12—C11—S1107.34 (10)C14—C15—H15121.0
C10—C11—S1109.86 (10)N2—C20—H20A109.5
C8—C11—S1109.95 (9)N2—C20—H20B109.5
C7—N1—C6111.44 (12)H20A—C20—H20B109.5
C7—N1—C19123.43 (14)N2—C20—H20C109.5
C6—N1—C19124.72 (14)H20A—C20—H20C109.5
C2—C1—C6119.63 (14)H20B—C20—H20C109.5
C2—C1—C8131.94 (13)C17—C18—C13118.84 (17)
C6—C1—C8108.43 (12)C17—C18—H18120.6
N2—C8—C1116.51 (12)C13—C18—H18120.6
N2—C8—C11100.00 (11)O3—C21—O4124.29 (18)
C1—C8—C11115.14 (11)O3—C21—C10124.94 (19)
N2—C8—C7114.14 (12)O4—C21—C10110.76 (14)
C1—C8—C7101.59 (11)C6—C5—C4117.01 (16)
C11—C8—C7109.90 (11)C6—C5—H5121.5
O2—C12—C13126.37 (14)C4—C5—H5121.5
O2—C12—C11122.04 (14)C4—C3—C2120.62 (17)
C13—C12—C11111.58 (12)C4—C3—H3119.7
C13—C14—C15120.82 (14)C2—C3—H3119.7
C13—C14—S1114.70 (12)C3—C4—C5121.49 (16)
C15—C14—S1124.48 (13)C3—C4—H4119.3
O1—C7—N1125.43 (14)C5—C4—H4119.3
O1—C7—C8127.09 (14)N1—C19—H19A109.5
N1—C7—C8107.43 (12)N1—C19—H19B109.5
C20—N2—C8115.60 (12)H19A—C19—H19B109.5
C20—N2—C9115.19 (13)N1—C19—H19C109.5
C8—N2—C9108.58 (12)H19A—C19—H19C109.5
C14—C13—C18120.33 (15)H19B—C19—H19C109.5
C14—C13—C12113.66 (13)C15—C16—C17121.70 (18)
C18—C13—C12125.96 (15)C15—C16—H16119.2
C5—C6—C1122.43 (15)C17—C16—H16119.2
C5—C6—N1127.21 (15)C18—C17—C16120.38 (17)
C1—C6—N1110.28 (13)C18—C17—H17119.8
C1—C2—C3118.71 (15)C16—C17—H17119.8
C1—C2—H2120.6O4—C22—C23107.59 (18)
C3—C2—H2120.6O4—C22—H22A110.2
C21—O4—C22118.09 (16)C23—C22—H22A110.2
C21—C10—C9115.47 (14)O4—C22—H22B110.2
C21—C10—C11114.26 (13)C23—C22—H22B110.2
C9—C10—C11103.79 (12)H22A—C22—H22B108.5
C21—C10—H10107.6C22—C23—H23A109.5
C9—C10—H10107.6C22—C23—H23B109.5
C11—C10—H10107.6H23A—C23—H23B109.5
N2—C9—C10105.23 (12)C22—C23—H23C109.5
N2—C9—H9A110.7H23A—C23—H23C109.5
C10—C9—H9A110.7H23B—C23—H23C109.5
N2—C9—H9B110.7
C14—S1—C11—C121.58 (10)S1—C14—C13—C121.56 (17)
C14—S1—C11—C10−123.66 (11)O2—C12—C13—C14178.78 (15)
C14—S1—C11—C8127.17 (10)C11—C12—C13—C14−0.26 (18)
C2—C1—C8—N2−45.8 (2)O2—C12—C13—C181.3 (3)
C6—C1—C8—N2133.48 (13)C11—C12—C13—C18−177.73 (15)
C2—C1—C8—C1170.9 (2)C2—C1—C6—C5−3.9 (2)
C6—C1—C8—C11−109.88 (13)C8—C1—C6—C5176.69 (14)
C2—C1—C8—C7−170.46 (15)C2—C1—C6—N1172.93 (13)
C6—C1—C8—C78.80 (14)C8—C1—C6—N1−6.44 (16)
C12—C11—C8—N2−169.56 (12)C7—N1—C6—C5177.34 (15)
C10—C11—C8—N2−46.29 (13)C19—N1—C6—C54.5 (3)
S1—C11—C8—N269.26 (11)C7—N1—C6—C10.65 (17)
C12—C11—C8—C164.75 (16)C19—N1—C6—C1−172.18 (15)
C10—C11—C8—C1−171.98 (12)C6—C1—C2—C33.3 (2)
S1—C11—C8—C1−56.43 (14)C8—C1—C2—C3−177.51 (15)
C12—C11—C8—C7−49.19 (16)C12—C11—C10—C21−73.44 (17)
C10—C11—C8—C774.08 (13)C8—C11—C10—C21163.12 (13)
S1—C11—C8—C7−170.37 (9)S1—C11—C10—C2147.50 (16)
C10—C11—C12—O2−57.80 (19)C12—C11—C10—C9159.94 (13)
C8—C11—C12—O257.28 (19)C8—C11—C10—C936.51 (14)
S1—C11—C12—O2179.88 (12)S1—C11—C10—C9−79.11 (13)
C10—C11—C12—C13121.29 (14)C20—N2—C9—C10−148.67 (14)
C8—C11—C12—C13−123.63 (13)C8—N2—C9—C10−17.23 (17)
S1—C11—C12—C13−1.03 (14)C21—C10—C9—N2−139.30 (14)
C11—S1—C14—C13−1.87 (12)C11—C10—C9—N2−13.45 (17)
C11—S1—C14—C15177.39 (14)C13—C14—C15—C160.3 (2)
C6—N1—C7—O1−172.45 (15)S1—C14—C15—C16−178.89 (14)
C19—N1—C7—O10.5 (3)C14—C13—C18—C170.0 (3)
C6—N1—C7—C85.18 (17)C12—C13—C18—C17177.33 (18)
C19—N1—C7—C8178.12 (15)C22—O4—C21—O33.3 (3)
N2—C8—C7—O142.9 (2)C22—O4—C21—C10−177.97 (16)
C1—C8—C7—O1169.17 (15)C9—C10—C21—O3−15.2 (3)
C11—C8—C7—O1−68.47 (19)C11—C10—C21—O3−135.47 (19)
N2—C8—C7—N1−134.66 (13)C9—C10—C21—O4166.10 (14)
C1—C8—C7—N1−8.42 (15)C11—C10—C21—O445.81 (19)
C11—C8—C7—N1113.95 (13)C1—C6—C5—C41.6 (2)
C1—C8—N2—C20−63.90 (18)N1—C6—C5—C4−174.69 (15)
C11—C8—N2—C20171.35 (14)C1—C2—C3—C4−0.5 (2)
C7—C8—N2—C2054.10 (18)C2—C3—C4—C5−1.8 (3)
C1—C8—N2—C9164.88 (13)C6—C5—C4—C31.2 (3)
C11—C8—N2—C940.13 (14)C14—C15—C16—C17−0.5 (3)
C7—C8—N2—C9−77.11 (16)C13—C18—C17—C16−0.2 (3)
C15—C14—C13—C18−0.1 (2)C15—C16—C17—C180.4 (4)
S1—C14—C13—C18179.19 (13)C21—O4—C22—C23165.63 (18)
C15—C14—C13—C12−177.72 (14)
D—H···AD—HH···AD···AD—H···A
C5—H5···O3i0.932.463.212 (2)138
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C5H5O3i 0.932.463.212(2)138

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Aryl tryptamines: selective high-affinity antagonists for the h5-HT2A receptor.

Authors:  G I Stevenson; A L Smith; S Lewis; S G Michie; J G Neduvelil; S Patel; R Marwood; S Patel; J L Castro
Journal:  Bioorg Med Chem Lett       Date:  2000-12-18       Impact factor: 2.823

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

5.  Crystal structures of ethyl (2S*,2'R*)-1'-methyl-2'',3-dioxo-2,3-di-hydro-dispiro-[1-benzo-thio-phene-2,3'-pyrrolidine-2',3''-indoline]-4'-carboxyl-ate and ethyl (2S*,2'R*)-5''-chloro-1'-methyl-2'',3-dioxo-2,3-di-hydro-dispiro-[1-benzo-thio-phene-2,3'-pyrrolidine-2',3''-indoline]-4'-carboxyl-ate.

Authors:  M P Savithri; M Suresh; R Raghunathan; G Vimala; R Raja; A SubbiahPandi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-19
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.