| Literature DB >> 25844199 |
Yabin Shi1, Benyong Lou1.
Abstract
The title complex, [Mg(C7H7N4O2)2(H2O)4], lies across an inversion centre and the Mg(II) atom is coordinated in a slightly distorted octa-hedral environment by four aqua ligands in the equatorial sites and two 1,3-dimethyl-2,6-dioxo-3,7-di-hydro-1H-purin-9-ide ligands, through imidazole ring N atoms, in the axial sites. An intra-molecular O-H⋯O hydrogen bond forms an S(7) graph-set motif. In the crystal, O-H⋯O and O-H⋯N hydrogen bonds link complex mol-ecules forming a three-dimensional network incorporating R 4 (2)(8) and R 2 (2)(18) graph-set motifs.Entities:
Keywords: crystal structure; hydrogen bonding; tetraaqua mononuclear MgII complex; theophylline
Year: 2015 PMID: 25844199 PMCID: PMC4350700 DOI: 10.1107/S2056989015003758
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title complex, shown with 30% probability displacement ellipsoids [symmetry code: (A) x, −y, −z + 1).
Selected geometric parameters (, )
| Mg1O3i | 2.0672(17) | Mg1N1i | 2.2255(19) |
| Mg1O4i | 2.081(2) | ||
| O3iMg1O3 | 180.00(3) | O4Mg1N1i | 91.31(6) |
| O3Mg1O4i | 87.98(7) | O3Mg1N1 | 90.06(6) |
| O3Mg1O4 | 92.02(7) | O4Mg1N1 | 88.69(6) |
| O4iMg1O4 | 180.0 | N1iMg1N1 | 180.0 |
| O3Mg1N1i | 89.94(6) |
Symmetry code: (i) .
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O3H3 | 0.88(1) | 1.97(1) | 2.809(3) | 160(3) |
| O3H3 | 0.87(1) | 1.80(1) | 2.668(2) | 173(3) |
| O4H4 | 0.87(1) | 1.93(1) | 2.780(2) | 168(3) |
| O4H4 | 0.87(1) | 1.96(1) | 2.829(3) | 178(3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2Part of the crystal structure, showing hydrogen bonds in two dimensions (dashed lines).
Figure 3Part of the crystal structure, showing the overall three-dimensional hydrogen-bonded structure (dashed lines).
Experimental details
| Crystal data | |
| Chemical formula | [Mg(C7H7N4O2)2(H2O)4] |
|
| 454.71 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 295 |
|
| 7.694(4), 13.399(7), 9.739(5) |
| () | 105.169(9) |
|
| 969.0(9) |
|
| 2 |
| Radiation type | Mo |
| (mm1) | 0.16 |
| Crystal size (mm) | 0.2 0.2 0.2 |
| Data collection | |
| Diffractometer | Rigaku CCD |
| Absorption correction | Multi-scan ( |
|
| 0.949, 1.000 |
| No. of measured, independent and observed [ | 7442, 2153, 1738 |
|
| 0.032 |
| (sin /)max (1) | 0.650 |
| Refinement | |
|
| 0.049, 0.123, 1.09 |
| No. of reflections | 2153 |
| No. of parameters | 160 |
| No. of restraints | 4 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.29, 0.25 |
Computer programs: CrystalClear (Rigaku, 2000 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸) and X-SEED (Barbour, 2001 ▸).
| [Mg(C7H7N4O2)2(H2O)4] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2170 reflections |
| θ = 2.7–27.5° | |
| µ = 0.16 mm−1 | |
| β = 105.169 (9)° | Prism, colorless |
| 0.2 × 0.2 × 0.2 mm | |
| Rigaku CCD diffractometer | 2153 independent reflections |
| Radiation source: fine-focus sealed tube | 1738 reflections with |
| Graphite monochromator | |
| Detector resolution: 14.6306 pixels mm-1 | θmax = 27.5°, θmin = 2.7° |
| CCD_Profile_fitting scans | |
| Absorption correction: multi-scan ( | |
| 7442 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2153 reflections | (Δ/σ)max < 0.001 |
| 160 parameters | Δρmax = 0.29 e Å−3 |
| 4 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Mg1 | 0.5000 | 0.0000 | 0.5000 | 0.0220 (2) | |
| O1 | 0.0856 (2) | −0.02565 (12) | −0.27579 (14) | 0.0366 (4) | |
| O2 | 0.2118 (2) | −0.14692 (11) | 0.17770 (15) | 0.0396 (4) | |
| O3 | 0.5654 (2) | 0.14587 (11) | 0.56135 (16) | 0.0361 (4) | |
| O4 | 0.2306 (2) | 0.02272 (14) | 0.49391 (16) | 0.0419 (4) | |
| N1 | 0.4375 (2) | 0.04557 (11) | 0.27257 (16) | 0.0253 (4) | |
| N2 | 0.4425 (2) | 0.16133 (12) | 0.09955 (17) | 0.0295 (4) | |
| N3 | 0.2518 (2) | 0.07368 (12) | −0.10112 (17) | 0.0277 (4) | |
| N4 | 0.1533 (2) | −0.08355 (12) | −0.04781 (17) | 0.0260 (4) | |
| C1 | 0.4967 (3) | 0.13335 (14) | 0.2386 (2) | 0.0285 (4) | |
| H1 | 0.5733 | 0.1745 | 0.3083 | 0.034* | |
| C2 | 0.3344 (2) | 0.01127 (14) | 0.14086 (19) | 0.0231 (4) | |
| C3 | 0.3417 (3) | 0.08329 (14) | 0.0411 (2) | 0.0241 (4) | |
| C4 | 0.2540 (4) | 0.15494 (17) | −0.2003 (2) | 0.0426 (6) | |
| H4A | 0.3623 | 0.1497 | −0.2350 | 0.064* | |
| H4B | 0.2543 | 0.2190 | −0.1517 | 0.064* | |
| H4C | 0.1468 | 0.1507 | −0.2809 | 0.064* | |
| C5 | 0.0602 (3) | −0.17694 (16) | −0.1029 (2) | 0.0379 (5) | |
| H5A | −0.0695 | −0.1645 | −0.1367 | 0.057* | |
| H5B | 0.0827 | −0.2270 | −0.0269 | 0.057* | |
| H5C | 0.1054 | −0.2016 | −0.1819 | 0.057* | |
| C6 | 0.1602 (2) | −0.01192 (15) | −0.1483 (2) | 0.0263 (4) | |
| C7 | 0.2344 (3) | −0.07757 (14) | 0.1001 (2) | 0.0256 (4) | |
| H3A | 0.505 (3) | 0.2015 (13) | 0.557 (3) | 0.058 (8)* | |
| H3B | 0.644 (3) | 0.149 (2) | 0.6439 (17) | 0.059 (9)* | |
| H4D | 0.188 (4) | 0.007 (2) | 0.566 (2) | 0.072 (10)* | |
| H4E | 0.142 (3) | 0.023 (2) | 0.4175 (19) | 0.055 (8)* |
| Mg1 | 0.0247 (5) | 0.0223 (4) | 0.0169 (5) | 0.0003 (3) | 0.0018 (3) | 0.0002 (3) |
| O1 | 0.0312 (8) | 0.0563 (10) | 0.0181 (7) | −0.0009 (7) | −0.0013 (6) | −0.0023 (6) |
| O2 | 0.0501 (9) | 0.0329 (8) | 0.0287 (8) | −0.0141 (7) | −0.0021 (7) | 0.0066 (6) |
| O3 | 0.0495 (10) | 0.0243 (7) | 0.0278 (8) | 0.0015 (7) | −0.0020 (7) | −0.0018 (6) |
| O4 | 0.0278 (8) | 0.0722 (12) | 0.0239 (9) | 0.0027 (8) | 0.0034 (7) | 0.0008 (8) |
| N1 | 0.0292 (9) | 0.0234 (8) | 0.0207 (8) | −0.0013 (6) | 0.0022 (7) | −0.0005 (6) |
| N2 | 0.0375 (9) | 0.0255 (8) | 0.0238 (9) | −0.0042 (7) | 0.0052 (7) | 0.0021 (6) |
| N3 | 0.0311 (9) | 0.0309 (9) | 0.0189 (8) | 0.0003 (7) | 0.0026 (7) | 0.0055 (6) |
| N4 | 0.0252 (8) | 0.0274 (8) | 0.0225 (8) | −0.0018 (6) | 0.0010 (7) | −0.0027 (6) |
| C1 | 0.0323 (10) | 0.0253 (10) | 0.0257 (10) | −0.0041 (8) | 0.0037 (8) | −0.0012 (8) |
| C2 | 0.0242 (9) | 0.0244 (9) | 0.0193 (9) | 0.0017 (7) | 0.0035 (7) | 0.0005 (7) |
| C3 | 0.0248 (9) | 0.0253 (9) | 0.0211 (9) | 0.0040 (7) | 0.0042 (7) | 0.0007 (7) |
| C4 | 0.0566 (15) | 0.0412 (13) | 0.0274 (12) | 0.0027 (11) | 0.0064 (10) | 0.0114 (9) |
| C5 | 0.0399 (12) | 0.0357 (11) | 0.0332 (12) | −0.0078 (9) | 0.0011 (10) | −0.0100 (9) |
| C6 | 0.0202 (9) | 0.0367 (11) | 0.0205 (10) | 0.0047 (8) | 0.0029 (7) | −0.0006 (8) |
| C7 | 0.0257 (10) | 0.0274 (9) | 0.0223 (10) | 0.0003 (7) | 0.0039 (8) | 0.0000 (7) |
| Mg1—O3i | 2.0672 (17) | N3—C6 | 1.361 (3) |
| Mg1—O3 | 2.0672 (17) | N3—C3 | 1.383 (2) |
| Mg1—O4i | 2.081 (2) | N3—C4 | 1.459 (3) |
| Mg1—O4 | 2.081 (2) | N4—C6 | 1.382 (3) |
| Mg1—N1i | 2.2255 (19) | N4—C7 | 1.414 (3) |
| Mg1—N1 | 2.2255 (19) | N4—C5 | 1.472 (3) |
| O1—C6 | 1.238 (2) | C1—H1 | 0.9500 |
| O2—C7 | 1.238 (2) | C2—C3 | 1.381 (3) |
| O3—H3A | 0.875 (10) | C2—C7 | 1.416 (3) |
| O3—H3B | 0.872 (10) | C4—H4A | 0.9800 |
| O4—H4D | 0.873 (10) | C4—H4B | 0.9800 |
| O4—H4E | 0.867 (10) | C4—H4C | 0.9800 |
| N1—C1 | 1.334 (3) | C5—H5A | 0.9800 |
| N1—C2 | 1.398 (2) | C5—H5B | 0.9800 |
| N2—C3 | 1.337 (2) | C5—H5C | 0.9800 |
| N2—C1 | 1.361 (3) | ||
| O3i—Mg1—O3 | 180.00 (3) | C6—N4—C5 | 115.94 (16) |
| O3i—Mg1—O4i | 92.02 (7) | C7—N4—C5 | 117.55 (16) |
| O3—Mg1—O4i | 87.98 (7) | N1—C1—N2 | 116.97 (17) |
| O3i—Mg1—O4 | 87.98 (7) | N1—C1—H1 | 121.5 |
| O3—Mg1—O4 | 92.02 (7) | N2—C1—H1 | 121.5 |
| O4i—Mg1—O4 | 180.0 | C3—C2—N1 | 107.34 (17) |
| O3i—Mg1—N1i | 90.06 (6) | C3—C2—C7 | 120.60 (17) |
| O3—Mg1—N1i | 89.94 (6) | N1—C2—C7 | 132.06 (17) |
| O4i—Mg1—N1i | 88.69 (6) | N2—C3—C2 | 111.89 (17) |
| O4—Mg1—N1i | 91.31 (6) | N2—C3—N3 | 125.57 (17) |
| O3i—Mg1—N1 | 89.94 (6) | C2—C3—N3 | 122.53 (17) |
| O3—Mg1—N1 | 90.06 (6) | N3—C4—H4A | 109.5 |
| O4i—Mg1—N1 | 91.31 (6) | N3—C4—H4B | 109.5 |
| O4—Mg1—N1 | 88.69 (6) | H4A—C4—H4B | 109.5 |
| N1i—Mg1—N1 | 180.0 | N3—C4—H4C | 109.5 |
| Mg1—O3—H3A | 135.0 (19) | H4A—C4—H4C | 109.5 |
| Mg1—O3—H3B | 111.8 (19) | H4B—C4—H4C | 109.5 |
| H3A—O3—H3B | 103 (3) | N4—C5—H5A | 109.5 |
| Mg1—O4—H4D | 122 (2) | N4—C5—H5B | 109.5 |
| Mg1—O4—H4E | 125.3 (19) | H5A—C5—H5B | 109.5 |
| H4D—O4—H4E | 108 (3) | N4—C5—H5C | 109.5 |
| C1—N1—C2 | 102.20 (16) | H5A—C5—H5C | 109.5 |
| C1—N1—Mg1 | 119.32 (12) | H5B—C5—H5C | 109.5 |
| C2—N1—Mg1 | 138.26 (13) | O1—C6—N3 | 121.81 (19) |
| C3—N2—C1 | 101.59 (16) | O1—C6—N4 | 120.91 (19) |
| C6—N3—C3 | 119.72 (16) | N3—C6—N4 | 117.28 (17) |
| C6—N3—C4 | 120.00 (17) | O2—C7—N4 | 118.96 (17) |
| C3—N3—C4 | 120.28 (17) | O2—C7—C2 | 127.74 (18) |
| C6—N4—C7 | 126.42 (16) | N4—C7—C2 | 113.31 (17) |
| H··· | ||||
| O3—H3 | 0.88 (1) | 1.97 (1) | 2.809 (3) | 160 (3) |
| O3—H3 | 0.87 (1) | 1.80 (1) | 2.668 (2) | 173 (3) |
| O4—H4 | 0.87 (1) | 1.93 (1) | 2.780 (2) | 168 (3) |
| O4—H4 | 0.87 (1) | 1.96 (1) | 2.829 (3) | 178 (3) |