Literature DB >> 25840518

Probability distributions for multimeric systems.

Jaroslav Albert1, Marianne Rooman2.   

Abstract

We propose a fast and accurate method of obtaining the equilibrium mono-modal joint probability distributions for multimeric systems. The method necessitates only two assumptions: the copy number of all species of molecule may be treated as continuous; and, the probability density functions (pdf) are well-approximated by multivariate skew normal distributions (MSND). Starting from the master equation, we convert the problem into a set of equations for the statistical moments which are then expressed in terms of the parameters intrinsic to the MSND. Using an optimization package on Mathematica, we minimize a Euclidian distance function comprising of a sum of the squared difference between the left and the right hand sides of these equations. Comparison of results obtained via our method with those rendered by the Gillespie algorithm demonstrates our method to be highly accurate as well as efficient.

Keywords:  62E20; 65C20; 65C50

Mesh:

Substances:

Year:  2015        PMID: 25840518     DOI: 10.1007/s00285-015-0877-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


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  2 in total

1.  Path integral approach to generating functions for multistep post-transcription and post-translation processes and arbitrary initial conditions.

Authors:  Jaroslav Albert
Journal:  J Math Biol       Date:  2019-09-05       Impact factor: 2.259

2.  A Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-Networks.

Authors:  Jaroslav Albert
Journal:  PLoS One       Date:  2016-03-01       Impact factor: 3.240

  2 in total

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