Literature DB >> 16204840

The linear noise approximation for molecular fluctuations within cells.

F Hayot1, C Jayaprakash.   

Abstract

We study the applicability of Van Kampen's linear noise approximation to the calculation of fluctuations in cells due to small number of molecules for simple genetic systems not previously considered. These systems include dimer formation and feedback. We explain why the linear noise approximation can be surprisingly effective, but also illustrate how it fails in a simple example when a protein probability distribution is not purely Gaussian.

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Year:  2004        PMID: 16204840     DOI: 10.1088/1478-3967/1/4/002

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  11 in total

1.  Discreteness-induced concentration inversion in mesoscopic chemical systems.

Authors:  Rajesh Ramaswamy; Nélido González-Segredo; Ivo F Sbalzarini; Ramon Grima
Journal:  Nat Commun       Date:  2012-04-10       Impact factor: 14.919

2.  Stochastic kinetics of viral capsid assembly based on detailed protein structures.

Authors:  Martin Hemberg; Sophia N Yaliraki; Mauricio Barahona
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

3.  Probability distributions for multimeric systems.

Authors:  Jaroslav Albert; Marianne Rooman
Journal:  J Math Biol       Date:  2015-04-04       Impact factor: 2.259

4.  Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansion.

Authors:  Philipp Thomas; Hannes Matuschek; Ramon Grima
Journal:  PLoS One       Date:  2012-06-12       Impact factor: 3.240

5.  Biochemical fluctuations, optimisation and the linear noise approximation.

Authors:  Jürgen Pahle; Joseph D Challenger; Pedro Mendes; Alan J McKane
Journal:  BMC Syst Biol       Date:  2012-07-17

6.  Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference.

Authors:  Giorgos Minas; David A Rand
Journal:  PLoS Comput Biol       Date:  2017-07-24       Impact factor: 4.475

7.  Linear mapping approximation of gene regulatory networks with stochastic dynamics.

Authors:  Zhixing Cao; Ramon Grima
Journal:  Nat Commun       Date:  2018-08-17       Impact factor: 14.919

8.  Quantifying the Role of Stochasticity in the Development of Autoimmune Disease.

Authors:  Lindsay B Nicholson; Konstantin B Blyuss; Farzad Fatehi
Journal:  Cells       Date:  2020-04-02       Impact factor: 6.600

9.  How reliable is the linear noise approximation of gene regulatory networks?

Authors:  Philipp Thomas; Hannes Matuschek; Ramon Grima
Journal:  BMC Genomics       Date:  2013-10-01       Impact factor: 3.969

10.  Stochastic Effects in Autoimmune Dynamics.

Authors:  Farzad Fatehi; Sergey N Kyrychko; Aleksandra Ross; Yuliya N Kyrychko; Konstantin B Blyuss
Journal:  Front Physiol       Date:  2018-02-02       Impact factor: 4.566

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