Literature DB >> 25839240

Pursuit-and-Evasion Reaction-Diffusion Waves in Microreactors with Tailored Geometry.

A Zambrano1, A S Zadorin1, Y Rondelez2, A Estévez-Torres1, J-C Galas1.   

Abstract

Out-of-equilibrium chemical systems may self-organize into structures displaying spatiotemporal order, such as traveling waves and Turing patterns. Because of its predictable chemistry, DNA has recently appeared as an interesting candidate to engineer these spatiotemporal structures. However, in addition to the intrinsic chemical parameters, initial and boundary conditions have a major impact on the final structure. Here we take advantage of microfluidics to design controlled reactors and investigate pursuit-and-evasion chemical waves generated by a DNA-based reaction network with Predator-Prey dynamics. We first propose two complementary microfabrication strategies to either control the initial condition or the two-dimensional geometry of the reactor where the waves develop. We subsequently use them to investigate the effect of curvature in wave propagation. We finally show that DNA-based waves can compute the optimal path within a maze. We thus suggest that coupling configurable microfluidics to programmable DNA-based dissipative reaction networks is a powerful route to investigate spatiotemporal order formation in chemistry.

Year:  2015        PMID: 25839240     DOI: 10.1021/jp509474w

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Microscopic agents programmed by DNA circuits.

Authors:  G Gines; A S Zadorin; J-C Galas; T Fujii; A Estevez-Torres; Y Rondelez
Journal:  Nat Nanotechnol       Date:  2017-01-30       Impact factor: 39.213

2.  Synthesis and materialization of a reaction-diffusion French flag pattern.

Authors:  Anton S Zadorin; Yannick Rondelez; Guillaume Gines; Vadim Dilhas; Georg Urtel; Adrian Zambrano; Jean-Christophe Galas; André Estevez-Torres
Journal:  Nat Chem       Date:  2017-05-01       Impact factor: 24.427

3.  First characterization of a biphasic, switch-like DNA amplification.

Authors:  Burcu Özay; Cara M Robertus; Jackson L Negri; Stephanie E McCalla
Journal:  Analyst       Date:  2018-04-16       Impact factor: 4.616

4.  Spatiotemporal control of DNA-based chemical reaction network via electrochemical activation in microfluidics.

Authors:  Ievgen Kurylo; Guillaume Gines; Yannick Rondelez; Yannick Coffinier; Alexis Vlandas
Journal:  Sci Rep       Date:  2018-04-23       Impact factor: 4.379

5.  rEXPAR: An Isothermal Amplification Scheme That Is Robust to Autocatalytic Parasites.

Authors:  Georg Urtel; Marc Van Der Hofstadt; Jean-Christophe Galas; André Estevez-Torres
Journal:  Biochemistry       Date:  2019-05-29       Impact factor: 3.162

6.  A model of spatio-temporal regulation within biomaterials using DNA reaction-diffusion waveguides.

Authors:  Phillip J Dorsey; Dominic Scalise; Rebecca Schulman
Journal:  R Soc Open Sci       Date:  2022-08-24       Impact factor: 3.653

  6 in total

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