Literature DB >> 25838519

Supervised dictionary learning for inferring concurrent brain networks.

Shijie Zhao, Junwei Han, Jinglei Lv, Xi Jiang, Xintao Hu, Yu Zhao, Bao Ge, Lei Guo, Tianming Liu.   

Abstract

Task-based fMRI (tfMRI) has been widely used to explore functional brain networks via predefined stimulus paradigm in the fMRI scan. Traditionally, the general linear model (GLM) has been a dominant approach to detect task-evoked networks. However, GLM focuses on task-evoked or event-evoked brain responses and possibly ignores the intrinsic brain functions. In comparison, dictionary learning and sparse coding methods have attracted much attention recently, and these methods have shown the promise of automatically and systematically decomposing fMRI signals into meaningful task-evoked and intrinsic concurrent networks. Nevertheless, two notable limitations of current data-driven dictionary learning method are that the prior knowledge of task paradigm is not sufficiently utilized and that the establishment of correspondences among dictionary atoms in different brains have been challenging. In this paper, we propose a novel supervised dictionary learning and sparse coding method for inferring functional networks from tfMRI data, which takes both of the advantages of model-driven method and data-driven method. The basic idea is to fix the task stimulus curves as predefined model-driven dictionary atoms and only optimize the other portion of data-driven dictionary atoms. Application of this novel methodology on the publicly available human connectome project (HCP) tfMRI datasets has achieved promising results.

Entities:  

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Year:  2015        PMID: 25838519     DOI: 10.1109/TMI.2015.2418734

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  18 in total

1.  4D Modeling of fMRI Data via Spatio-Temporal Convolutional Neural Networks (ST-CNN).

Authors:  Yu Zhao; Xiang Li; Heng Huang; Wei Zhang; Shijie Zhao; Milad Makkie; Mo Zhang; Quanzheng Li; Tianming Liu
Journal:  IEEE Trans Cogn Dev Syst       Date:  2019-05-14       Impact factor: 3.379

2.  Joint representation of consistent structural and functional profiles for identification of common cortical landmarks.

Authors:  Shu Zhang; Yu Zhao; Xi Jiang; Dinggang Shen; Tianming Liu
Journal:  Brain Imaging Behav       Date:  2018-06       Impact factor: 3.978

3.  Constructing fine-granularity functional brain network atlases via deep convolutional autoencoder.

Authors:  Yu Zhao; Qinglin Dong; Hanbo Chen; Armin Iraji; Yujie Li; Milad Makkie; Zhifeng Kou; Tianming Liu
Journal:  Med Image Anal       Date:  2017-08-18       Impact factor: 8.545

4.  Connectome-scale functional intrinsic connectivity networks in macaques.

Authors:  Wei Zhang; Xi Jiang; Shu Zhang; Brittany R Howell; Yu Zhao; Tuo Zhang; Lei Guo; Mar M Sanchez; Xiaoping Hu; Tianming Liu
Journal:  Neuroscience       Date:  2017-08-24       Impact factor: 3.590

Review 5.  Resting-State Functional Connectivity in the Human Connectome Project: Current Status and Relevance to Understanding Psychopathology.

Authors:  Deanna M Barch
Journal:  Harv Rev Psychiatry       Date:  2017 Sep/Oct       Impact factor: 3.732

6.  Latent source mining in FMRI via restricted Boltzmann machine.

Authors:  Xintao Hu; Heng Huang; Bo Peng; Junwei Han; Nian Liu; Jinglei Lv; Lei Guo; Christine Guo; Tianming Liu
Journal:  Hum Brain Mapp       Date:  2018-02-18       Impact factor: 5.038

7.  Hierarchical Organization of Functional Brain Networks Revealed by Hybrid Spatiotemporal Deep Learning.

Authors:  Wei Zhang; Shijie Zhao; Xintao Hu; Qinglin Dong; Heng Huang; Shu Zhang; Yu Zhao; Haixing Dai; Fangfei Ge; Lei Guo; Tianming Liu
Journal:  Brain Connect       Date:  2020-03-05

8.  Discovering hierarchical common brain networks via multimodal deep belief network.

Authors:  Shu Zhang; Qinglin Dong; Wei Zhang; Heng Huang; Dajiang Zhu; Tianming Liu
Journal:  Med Image Anal       Date:  2019-03-29       Impact factor: 8.545

9.  Temporal Dynamics Assessment of Spatial Overlap Pattern of Functional Brain Networks Reveals Novel Functional Architecture of Cerebral Cortex.

Authors:  Xi Jiang; Xiang Li; Jinglei Lv; Shijie Zhao; Shu Zhang; Wei Zhang; Tuo Zhang; Junwei Han; Lei Guo; Tianming Liu
Journal:  IEEE Trans Biomed Eng       Date:  2016-08-10       Impact factor: 4.538

10.  Recognizing Brain States Using Deep Sparse Recurrent Neural Network.

Authors:  Han Wang; Shijie Zhao; Qinglin Dong; Yan Cui; Yaowu Chen; Junwei Han; Li Xie; Tianming Liu
Journal:  IEEE Trans Med Imaging       Date:  2018-10-23       Impact factor: 10.048

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