| Literature DB >> 25838463 |
Rajendra Kumar1, Helmut Grubmüller1.
Abstract
The do_x3dna package has been developed to analyze the structural fluctuations of DNA or RNA during molecular dynamics simulations. It extends the capability of the 3DNA package to GROMACS MD trajectories and includes new methods to calculate the global-helical axis of DNA and bending fluctuations during simulations. The package also includes a Python module dnaMD to perform and visualize statistical analyses of complex data obtained from the trajectories.Mesh：
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Year: 2015 PMID： 25838463 DOI： 10.1093/bioinformatics/btv190
Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937