Literature DB >> 25828650

4D hyperspherical harmonic (HyperSPHARM) representation of surface anatomy: a holistic treatment of multiple disconnected anatomical structures.

A Pasha Hosseinbor1, Moo K Chung2, Cheng Guan Koay3, Stacey M Schaefer4, Carien M van Reekum5, Lara Peschke Schmitz4, Matt Sutterer4, Andrew L Alexander6, Richard J Davidson7.   

Abstract

Image-based parcellation of the brain often leads to multiple disconnected anatomical structures, which pose significant challenges for analyses of morphological shapes. Existing shape models, such as the widely used spherical harmonic (SPHARM) representation, assume topological invariance, so are unable to simultaneously parameterize multiple disjoint structures. In such a situation, SPHARM has to be applied separately to each individual structure. We present a novel surface parameterization technique using 4D hyperspherical harmonics in representing multiple disjoint objects as a single analytic function, terming it HyperSPHARM. The underlying idea behind HyperSPHARM is to stereographically project an entire collection of disjoint 3D objects onto the 4D hypersphere and subsequently simultaneously parameterize them with the 4D hyperspherical harmonics. Hence, HyperSPHARM allows for a holistic treatment of multiple disjoint objects, unlike SPHARM. In an imaging dataset of healthy adult human brains, we apply HyperSPHARM to the hippocampi and amygdalae. The HyperSPHARM representations are employed as a data smoothing technique, while the HyperSPHARM coefficients are utilized in a support vector machine setting for object classification. HyperSPHARM yields nearly identical results as SPHARM, as will be shown in the paper. Its key advantage over SPHARM lies computationally; HyperSPHARM possess greater computational efficiency than SPHARM because it can parameterize multiple disjoint structures using much fewer basis functions and stereographic projection obviates SPHARM's burdensome surface flattening. In addition, HyperSPHARM can handle any type of topology, unlike SPHARM, whose analysis is confined to topologically invariant structures.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Classification; Hippocampus & Amygdala; Hyperspherical harmonics; SPHARM; Shape analysis

Mesh:

Year:  2015        PMID: 25828650      PMCID: PMC4405486          DOI: 10.1016/j.media.2015.02.004

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  15 in total

1.  Genus zero surface conformal mapping and its application to brain surface mapping.

Authors:  Xianfeng Gu; Yalin Wang; Tony F Chan; Paul M Thompson; Shing-Tung Yau
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

2.  A simple scheme for generating nearly uniform distribution of antipodally symmetric points on the unit sphere.

Authors:  Cheng Guan Koay
Journal:  J Comput Sci       Date:  2011-12

Review 3.  Cortical cartography using the discrete conformal approach of circle packings.

Authors:  Monica K Hurdal; Ken Stephenson
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  General multivariate linear modeling of surface shapes using SurfStat.

Authors:  Moo K Chung; Keith J Worsley; Brendon M Nacewicz; Kim M Dalton; Richard J Davidson
Journal:  Neuroimage       Date:  2010-07-08       Impact factor: 6.556

5.  Pseudometrically constrained centroidal voronoi tessellations: Generating uniform antipodally symmetric points on the unit sphere with a novel acceleration strategy and its applications to diffusion and three-dimensional radial MRI.

Authors:  Cheng Guan Koay
Journal:  Magn Reson Med       Date:  2014-02       Impact factor: 4.668

6.  4D hyperspherical harmonic (HyperSPHARM) representation of multiple disconnected brain subcortical structures.

Authors:  Ameer Pasha Hosseinbor; Moo K Chung; Stacey M Schaefer; Carien M van Reekum; Lara Peschke-Schmitz; Matt Sutterer; Andrew L Alexander; Richard J Davidson
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

7.  Aging is associated with positive responding to neutral information but reduced recovery from negative information.

Authors:  Carien M van Reekum; Stacey M Schaefer; Regina C Lapate; Catherine J Norris; Lawrence L Greischar; Richard J Davidson
Journal:  Soc Cogn Affect Neurosci       Date:  2010-04-12       Impact factor: 3.436

8.  A signal transformational framework for breaking the noise floor and its applications in MRI.

Authors:  Cheng Guan Koay; Evren Ozarslan; Peter J Basser
Journal:  J Magn Reson       Date:  2008-12-06       Impact factor: 2.229

9.  Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

Authors:  B B Avants; C L Epstein; M Grossman; J C Gee
Journal:  Med Image Anal       Date:  2007-06-23       Impact factor: 8.545

10.  Disease classification with hippocampal shape invariants.

Authors:  Boris Gutman; Yalin Wang; Jonathan Morra; Arthur W Toga; Paul M Thompson
Journal:  Hippocampus       Date:  2009-06       Impact factor: 3.899

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  1 in total

1.  Automatic construction of statistical shape models using deformable simplex meshes with vector field convolution energy.

Authors:  Jinke Wang; Changfa Shi
Journal:  Biomed Eng Online       Date:  2017-04-24       Impact factor: 2.819

  1 in total

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