Literature DB >> 25825321

Whole-exome sequencing and its impact in hereditary hearing loss.

Tahir Atik1, Guney Bademci1, Oscar Diaz-Horta1, Susan H Blanton1, Mustafa Tekin1.   

Abstract

Next-generation sequencing (NGS) technologies have played a central role in the genetic revolution. These technologies, especially whole-exome sequencing, have become the primary tool of geneticists to identify the causative DNA variants in Mendelian disorders, including hereditary deafness. Current research estimates that 1% of all human genes have a function in hearing. To date, mutations in over 80 genes have been reported to cause nonsyndromic hearing loss (NSHL). Strikingly, more than a quarter of all known genes related to NSHL were discovered in the past 5 years via NGS technologies. In this article, we review recent developments in the usage of NGS for hereditary deafness, with an emphasis on whole-exome sequencing.

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Year:  2015        PMID: 25825321      PMCID: PMC5503681          DOI: 10.1017/S001667231500004X

Source DB:  PubMed          Journal:  Genet Res (Camb)        ISSN: 0016-6723            Impact factor:   1.588


  61 in total

1.  A physical map of the human genome.

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Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  X-linked mixed deafness with stapes fixation in a Mauritian kindred: linkage to Xq probe pDP34.

Authors:  C Wallis; R Ballo; G Wallis; P Beighton; J Goldblatt
Journal:  Genomics       Date:  1988-11       Impact factor: 5.736

3.  A frameshift mutation in GRXCR2 causes recessively inherited hearing loss.

Authors:  Ayesha Imtiaz; David C Kohrman; Sadaf Naz
Journal:  Hum Mutat       Date:  2014-04-07       Impact factor: 4.878

4.  Mutations in TBC1D24, a gene associated with epilepsy, also cause nonsyndromic deafness DFNB86.

Authors:  Atteeq U Rehman; Regie Lyn P Santos-Cortez; Robert J Morell; Meghan C Drummond; Taku Ito; Kwanghyuk Lee; Asma A Khan; Muhammad Asim R Basra; Naveed Wasif; Muhammad Ayub; Rana A Ali; Syed I Raza; Deborah A Nickerson; Jay Shendure; Michael Bamshad; Saima Riazuddin; Neil Billington; Shaheen N Khan; Penelope L Friedman; Andrew J Griffith; Wasim Ahmad; Sheikh Riazuddin; Suzanne M Leal; Thomas B Friedman
Journal:  Am J Hum Genet       Date:  2014-01-02       Impact factor: 11.025

5.  Adenylate cyclase 1 (ADCY1) mutations cause recessive hearing impairment in humans and defects in hair cell function and hearing in zebrafish.

Authors:  Regie Lyn P Santos-Cortez; Kwanghyuk Lee; Arnaud P Giese; Muhammad Ansar; Muhammad Amin-Ud-Din; Kira Rehn; Xin Wang; Abdul Aziz; Ilene Chiu; Raja Hussain Ali; Joshua D Smith; Jay Shendure; Michael Bamshad; Deborah A Nickerson; Zubair M Ahmed; Wasim Ahmad; Saima Riazuddin; Suzanne M Leal
Journal:  Hum Mol Genet       Date:  2014-01-29       Impact factor: 6.150

6.  A dominant mutation in the stereocilia-expressing gene TBC1D24 is a probable cause for nonsyndromic hearing impairment.

Authors:  Luping Zhang; Lingxiang Hu; Yongchuan Chai; Xiuhong Pang; Tao Yang; Hao Wu
Journal:  Hum Mutat       Date:  2014-05-06       Impact factor: 4.878

7.  TBC1D24 mutation causes autosomal-dominant nonsyndromic hearing loss.

Authors:  Hela Azaiez; Kevin T Booth; Fengxiao Bu; Patrick Huygen; Seiji B Shibata; A Eliot Shearer; Diana Kolbe; Nicole Meyer; E Ann Black-Ziegelbein; Richard J H Smith
Journal:  Hum Mutat       Date:  2014-05-06       Impact factor: 4.878

8.  Targeted genomic capture and massively parallel sequencing to identify genes for hereditary hearing loss in Middle Eastern families.

Authors:  Zippora Brownstein; Lilach M Friedman; Hashem Shahin; Varda Oron-Karni; Nitzan Kol; Amal Abu Rayyan; Thomas Parzefall; Dorit Lev; Stavit Shalev; Moshe Frydman; Bella Davidov; Mordechai Shohat; Michele Rahile; Sari Lieberman; Ephrat Levy-Lahad; Ming K Lee; Noam Shomron; Mary-Claire King; Tom Walsh; Moien Kanaan; Karen B Avraham
Journal:  Genome Biol       Date:  2011-09-14       Impact factor: 13.583

9.  Hereditary hearing loss: a 96 gene targeted sequencing protocol reveals novel alleles in a series of Italian and Qatari patients.

Authors:  D Vozzi; A Morgan; D Vuckovic; A D'Eustacchio; K Abdulhadi; E Rubinato; R Badii; P Gasparini; G Girotto
Journal:  Gene       Date:  2014-03-20       Impact factor: 3.688

10.  Application of massively parallel sequencing to genetic diagnosis in multiplex families with idiopathic sensorineural hearing impairment.

Authors:  Chen-Chi Wu; Yin-Hung Lin; Ying-Chang Lu; Pei-Jer Chen; Wei-Shiung Yang; Chuan-Jen Hsu; Pei-Lung Chen
Journal:  PLoS One       Date:  2013-02-22       Impact factor: 3.240

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  19 in total

1.  Targeted Resequencing of Deafness Genes Reveals a Founder MYO15A Variant in Northeastern Brazil.

Authors:  Gabrielle N Manzoli; Guney Bademci; Angelina X Acosta; Têmis M Félix; F Basak Cengiz; Joseph Foster; Danniel S Dias Da Silva; Ibis Menendez; Isalis Sanchez-Pena; Demet Tekin; Susan H Blanton; Kiyoko Abe-Sandes; Xue Zhong Liu; Mustafa Tekin
Journal:  Ann Hum Genet       Date:  2016-11       Impact factor: 1.670

2.  A next-generation sequencing gene panel (MiamiOtoGenes) for comprehensive analysis of deafness genes.

Authors:  Demet Tekin; Denise Yan; Guney Bademci; Yong Feng; Shengru Guo; Joseph Foster; Susan Blanton; Mustafa Tekin; Xuezhong Liu
Journal:  Hear Res       Date:  2016-02-02       Impact factor: 3.208

Review 3.  Navigating genetic diagnostics in patients with hearing loss.

Authors:  Christina M Sloan-Heggen; Richard J H Smith
Journal:  Curr Opin Pediatr       Date:  2016-12       Impact factor: 2.856

4.  Mutations in MINAR2 encoding membrane integral NOTCH2-associated receptor 2 cause deafness in humans and mice.

Authors:  Guney Bademci; María Lachgar-Ruiz; Mangesh Deokar; Mohammad Faraz Zafeer; Clemer Abad; Muzeyyen Yildirim Baylan; Neil J Ingham; Jing Chen; Claire J Sineni; Nirmal Vadgama; Ioannis Karakikes; Shengru Guo; Duygu Duman; Nitu Singh; Gaurav Harlalka; Shirish P Jain; Barry A Chioza; Katherina Walz; Karen P Steel; Jamal Nasir; Mustafa Tekin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779

5.  ESRP1 Mutations Cause Hearing Loss due to Defects in Alternative Splicing that Disrupt Cochlear Development.

Authors:  Alex M Rohacek; Thomas W Bebee; Richard K Tilton; Caleb M Radens; Chris McDermott-Roe; Natoya Peart; Maninder Kaur; Michael Zaykaner; Benjamin Cieply; Kiran Musunuru; Yoseph Barash; John A Germiller; Ian D Krantz; Russ P Carstens; Douglas J Epstein
Journal:  Dev Cell       Date:  2017-10-26       Impact factor: 12.270

6.  Exome sequencing utility in defining the genetic landscape of hearing loss and novel-gene discovery in Iran.

Authors:  Marzieh Mohseni; Mojgan Babanejad; Kevin T Booth; Payman Jamali; Khadijeh Jalalvand; Behzad Davarnia; Fariba Ardalani; Atefeh Khoshaeen; Sanaz Arzhangi; Fatemeh Ghodratpour; Maryam Beheshtian; Faezeh Jahanshad; Hasan Otukesh; Fatemeh Bahrami; Seyed Morteza Seifati; Niloofar Bazazzadegan; Farkhonde Habibi; Hanieh Behravan; Sepide Mirzaei; Fatemeh Keshavarzi; Nooshin Nikzat; Zohreh Mehrjoo; Holger Thiele; Michael Nothnagel; Hela Azaiez; Richard J Smith; Kimia Kahrizi; Hossein Najmabadi
Journal:  Clin Genet       Date:  2021-03-24       Impact factor: 4.438

7.  Identification of homozygous mutations for hearing loss.

Authors:  Mehdi Dianatpour; Emily Smith; Seyed Basir Hashemi; Mohammad A Farazifard; Navid Nezafat; Vahid Razban; Arya Mani
Journal:  Gene       Date:  2021-01-29       Impact factor: 3.688

8.  A Novel C-Terminal CIB2 (Calcium and Integrin Binding Protein 2) Mutation Associated with Non-Syndromic Hearing Loss in a Hispanic Family.

Authors:  Kunjan Patel; Arnaud P Giese; J M Grossheim; Rashmi S Hegde; Rashima S Hegde; Maria Delio; Joy Samanich; Saima Riazuddin; Gregory I Frolenkov; Jinlu Cai; Zubair M Ahmed; Bernice E Morrow
Journal:  PLoS One       Date:  2015-10-01       Impact factor: 3.240

9.  SHIELD: an integrative gene expression database for inner ear research.

Authors:  Jun Shen; Déborah I Scheffer; Kelvin Y Kwan; David P Corey
Journal:  Database (Oxford)       Date:  2015-07-24       Impact factor: 3.451

10.  Comprehensive Analysis of Deafness Genes in Families with Autosomal Recessive Nonsyndromic Hearing Loss.

Authors:  Tahir Atik; Huseyin Onay; Ayca Aykut; Guney Bademci; Tayfun Kirazli; Mustafa Tekin; Ferda Ozkinay
Journal:  PLoS One       Date:  2015-11-11       Impact factor: 3.240

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